Nsal008564.1
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- -
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000060.1:427224-429290[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 1.1e-05 0.0011 20.2 1.5 1 23 33 55 33 55 0.98 2 23 1.8e-05 0.0017 19.5 0.6 1 23 60 82 60 82 0.98 3 23 2.7e-05 0.0026 19.0 1.1 1 23 88 110 88 110 0.97 4 23 0.0023 0.22 12.9 4.4 1 23 117 139 117 139 0.97 5 23 0.0034 0.33 12.4 3.0 1 23 145 167 145 167 0.96 6 23 0.00079 0.076 14.4 6.2 1 23 175 197 175 197 0.97 7 23 3.1e-07 3e-05 25.1 2.1 1 23 203 225 203 225 0.98 8 23 5.6e-05 0.0054 18.0 2.5 2 23 232 253 231 253 0.97 9 23 0.00042 0.04 15.2 3.5 1 23 259 281 259 281 0.97 10 23 7e-06 0.00068 20.8 0.7 1 23 287 309 287 309 0.96 11 23 6.3e-06 0.00061 21.0 3.3 2 23 317 338 316 338 0.96 12 23 0.00017 0.017 16.4 0.5 1 23 342 365 342 365 0.97 13 23 0.00025 0.024 15.9 0.3 2 23 369 391 369 391 0.97 14 23 0.00022 0.022 16.1 1.1 1 23 397 419 397 419 0.98 15 23 3.3e-06 0.00032 21.8 0.4 1 23 425 447 425 447 0.98 16 23 1.8e-06 0.00017 22.7 3.8 2 23 457 478 456 478 0.96 17 23 7.5e-05 0.0073 17.6 1.0 1 23 484 506 484 506 0.98 18 23 5.4e-06 0.00053 21.2 0.6 1 23 512 534 512 534 0.98 19 23 0.021 2 9.9 4.9 1 23 540 562 540 562 0.97 20 23 0.033 3.2 9.3 1.3 1 23 573 595 573 595 0.94 21 23 0.00041 0.039 15.3 0.1 1 23 601 623 601 623 0.96 22 23 1.8e-06 0.00018 22.7 0.5 1 23 630 652 630 652 0.97 23 23 0.00022 0.021 16.1 0.5 3 22 661 680 660 682 0.90
Sequence Information
- Coding Sequence
- ATGTCCGTTTTGTCTGTAACATTGGGCGACTCTTCAATAAATGAAGAATCtagtaaatttgaattaaacgATGGAGATTTACAAAAGATTCCGTTGTTTTCGTGTACGTTATGCGGCCGAAATTTCCGATTTCAAAGCAGTGTTGAAATACACATGAAGAGACATGAACAAAAGCAGTACAACTGTAAGGTTTGTACAAAAATCTTTCCAAAATTATCGACGCTAGTTATACATATGAAATCACATAAGAACACTCGGCCCTACTTCTGCCCATATTGTGATCAAAAGTTCACGAGAACTGGCGCTTTAAAACTCCATCTATATTCGCATTCTCGTAACCgaaaaatgtatgtttgtcGGTTTTGCAATCAGAGATTTTCACAGAAAACGCACATGGTCCAACACCAATATATCCATTCGAAAACTAAACGATTTGCTTGCACCACATGTGAAAAACGATTTATTTGTAAAGCGTATTTAAAACGCCATATAAAAGGACATATTTTTAACGTGAACAAGCCACACAGTTgccatttatgttttaaaacattCGCAAAATCGCAAGATTTCACCGAGCATATACGTCGACATACCGTCGAACGACCATTTGCATGTAAAATATGTGAGAAAATGTTTTATAGCAAATCAGAtctaaacaaacacacacgcacacatcgCAGTATTCGTAACATATCTTGCACGAAATGTAAACGAAGGTTCTACACTGAATCCGAGTTTAGAGttcatttaaaaacacatGTAGACCATAAAAACTTCAATTGCACTAGTTGTGACCGTCACTTTAATTACCCGTTCGAAGTAAGACGCCATATGCGTTTACACTCCGGCGAAAAACCATTTTTATGCAAAGTTTGTAATAGAGGTTTCGCGGTTTCTTCCAATCTATACCGCCATCTTAGATCGCACAAGCCGGCAACGGGGCAACTAATGTGTGAAGTTTGCAACAGAACTTTTAAGCGTCCACACTATTTGAAGAAACACCGCGAAACCCACACAAAAATTTACAGTTGCGAGGAGTGCTCAATCACACTTAAAAATCCGTACGAATTAAAGCAACATAAACGAAACGTTCACAAATCGAACACTTGtgattattgtaaaaaaatctTCAAAGCCGGATCTAGTTTGATTGAGCATATTCGACGTATACACACGGGCGAACGGCCGTTTCCTTGTGACCAATGTGATGAACGTTTCTTCAACGTAACTCATCTATCCGAACACATTAGATTGCATACGGAAGAACGGCCCTACCCGTGTGAAGAGTGCGACAAAACGTTTGTGACGCCATTAGCAATGAAACGCCATTTTCGAACGCATAACGCGCACGAATTATCCAAACCATGCAAATGTACCTACTGTCCGAAAGCGTTTCGCTCAAAATCCGAACTGCGACTACATTTAAATCGACATGAAGGTATAAAACCGTTCACGTGTGAACATTGTGATAAAGGTTTCGCAGCACGAAATCAACTAGTTCAACATGTGAAATCACATACAGGCGAACGTCCGTACCCATGCAATTTATGCGACAAGAAATTCGCTAAAAACCAATCGTTGCTGTTGCATATTCGCTCGCACAACGATAATCGGCCGTTTTCTTGCGACCTGTGCCCGTTAAAGTGCAAAAGTTTACATGAACTGCAACGACATTCGAAGCAACATGTTAAAAAACCGGAAACGGATGAcagtatttttaattgtgttgagtgtaatattaaatttattactaaaaatgAGTTTGATCACCATAATATTGTGCATATTGGCGTTCGTGATTATGCGTGTGGTATTTGTAATAGGAGTTTTCTGTATGCGGATGAGTTAACGCGGCATATAGAGCTACATTCAGATGAGTcgataaaatttttttgtgatACTTGCGGTAAAGGTTTTATCACGGCGTCGAAGTTAAAGCAGCATGTTCGTGTACATGAGAGTAAGGGTAAAATACAAGATTGTAAATATTGCGGGAGGAGTTATAGTAGGATGTCTATGTTAGACAAGCATATTGTGGATAAACATAAAAACGAATCACTCAATTAG
- Protein Sequence
- MSVLSVTLGDSSINEESSKFELNDGDLQKIPLFSCTLCGRNFRFQSSVEIHMKRHEQKQYNCKVCTKIFPKLSTLVIHMKSHKNTRPYFCPYCDQKFTRTGALKLHLYSHSRNRKMYVCRFCNQRFSQKTHMVQHQYIHSKTKRFACTTCEKRFICKAYLKRHIKGHIFNVNKPHSCHLCFKTFAKSQDFTEHIRRHTVERPFACKICEKMFYSKSDLNKHTRTHRSIRNISCTKCKRRFYTESEFRVHLKTHVDHKNFNCTSCDRHFNYPFEVRRHMRLHSGEKPFLCKVCNRGFAVSSNLYRHLRSHKPATGQLMCEVCNRTFKRPHYLKKHRETHTKIYSCEECSITLKNPYELKQHKRNVHKSNTCDYCKKIFKAGSSLIEHIRRIHTGERPFPCDQCDERFFNVTHLSEHIRLHTEERPYPCEECDKTFVTPLAMKRHFRTHNAHELSKPCKCTYCPKAFRSKSELRLHLNRHEGIKPFTCEHCDKGFAARNQLVQHVKSHTGERPYPCNLCDKKFAKNQSLLLHIRSHNDNRPFSCDLCPLKCKSLHELQRHSKQHVKKPETDDSIFNCVECNIKFITKNEFDHHNIVHIGVRDYACGICNRSFLYADELTRHIELHSDESIKFFCDTCGKGFITASKLKQHVRVHESKGKIQDCKYCGRSYSRMSMLDKHIVDKHKNESLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01039440; iTF_01040288;
- 90% Identity
- iTF_01039440;
- 80% Identity
- -