Nbre010989.1
Basic Information
- Insect
- Nebria brevicollis
- Gene Symbol
- -
- Assembly
- GCA_944739395.1
- Location
- CALYJC010000183.1:408396-410615[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 2.4e-05 0.0022 19.2 2.2 1 23 84 106 84 106 0.98 2 23 2.1e-05 0.0019 19.4 0.6 1 23 111 133 111 133 0.98 3 23 2.6e-05 0.0024 19.1 1.0 1 23 139 161 139 161 0.97 4 23 0.0026 0.24 12.8 4.4 1 23 168 190 168 190 0.97 5 23 0.017 1.6 10.3 3.2 3 23 198 218 196 218 0.97 6 23 0.0002 0.018 16.3 3.0 1 23 226 248 226 248 0.97 7 23 3.6e-07 3.3e-05 25.0 2.1 1 23 254 276 254 276 0.98 8 23 6.5e-05 0.006 17.9 2.5 2 23 283 304 282 304 0.97 9 23 0.00048 0.045 15.1 3.5 1 23 310 332 310 332 0.97 10 23 8.1e-06 0.00075 20.7 0.7 1 23 338 360 338 360 0.96 11 23 7.3e-06 0.00068 20.8 3.3 2 23 368 389 367 389 0.96 12 23 0.0002 0.019 16.3 0.5 1 23 393 416 393 416 0.97 13 23 0.00029 0.027 15.8 0.3 2 23 420 442 420 442 0.97 14 23 0.00026 0.024 16.0 1.1 1 23 448 470 448 470 0.98 15 23 1.3e-05 0.0012 20.1 0.6 1 23 476 498 476 498 0.98 16 23 2e-06 0.00019 22.6 3.8 2 23 508 529 507 529 0.96 17 23 8.8e-05 0.0082 17.5 1.0 1 23 535 557 535 557 0.98 18 23 6.3e-06 0.00059 21.0 0.6 1 23 563 585 563 585 0.98 19 23 0.023 2.2 9.8 4.9 1 23 591 613 591 613 0.97 20 23 0.038 3.5 9.1 1.3 1 23 624 646 624 646 0.94 21 23 0.00047 0.044 15.2 0.1 1 23 652 674 652 674 0.96 22 23 2.1e-06 0.0002 22.5 0.5 1 23 681 703 681 703 0.97 23 23 0.00025 0.023 16.0 0.5 3 22 712 731 711 733 0.90
Sequence Information
- Coding Sequence
- aTGGATCCTAAACAATATGCAAcgacaaaaattaatgaagaaATATACAAAGACGAACtatcaataaacaaaataagagagtgtttaataattgaaaatcgaTTTGAAGACGATTATAATCCTCGAGAACTAAAGATTATAAAACCGGAAATAATGTCTGTTTTGTCTGTAACATTGGGCGACTCTTCAATAAATGAAGAATCTGgtaaatttgaattaattgaTGGAGATATACAAAAGATTCCGTTGTTTTCATGTACGTTCTGCGGCCGAAATTTCCGATTTCAAAGCAGTGTTGAAATACACATGAAGAGACACGAACAAAAGCAGTACAACTGTAAGGTTTGTACAAAAATCTTTCCAAAACTATCTACGCTAGTTATACATATGAAATCACATAAGAACACTCGGCCCTACTTCTGTCCATATTGTGATCAAAGGTTCACAAGAACTGGCGCTTTAAAACTGCATTTATATTCGCATTCTCGTAATCGAAAAATGTATGTTTGTCGATTTTGCAATCAGAGATTTTCACAGAAAACGCACATGGTCCAACACCAATATATCCATTCGAAAACGAAACGATTTGGTTGCACCACATGTGAAAAACGATTTATTTGTAAAGAGTATTTAAAACGCCATATAAAAGGACATATTTTTAACGTGAACAAGCCACACAGTTgccatttatgttttaaagcATTCGCGAAACCGCAAGATTTATCCGAACATATACGTCGACATACCGGTGAACGACCATTCGCATGTAAAATATGTGAGAAAATGTTTTATAGCAAATCAGAtctaaacaaacacacacgcacacatcgTAGTATTCGTAACATATCTTGCACGAAATGTAAACGAAGATTCTACACTGAATCCGAGTTTAGAgttcatttaaaaacacatttaGACCATAAAAACTTCAATTGCACTAGTTGTGACCGTCACTTTAATTACCCGTTCGAAGTAAGACGCCATATGCGTTTACACTCGGGCGAAAAACCATTTTTATGCAAAGTTTGTAATAGAGGTTTCGCGGTTTCTTCCAATCTATACCGCCATCTTAGATCGCACAATCCGGCAACGGGGCAACTAATGTGTGAAGTTTGCAACAGAACTTTTAAACGTCCACACTATTTGAAGAAACACCGCGAAACCCATACAAAAATTTACAGTTGCGAGGAGTGCTCAATCACGCTTAAAAATCCATACGAATTAAAGCAACATAAACGAAACGTTCACAAATCGAACACTTGTGATTACTGCAAAAAAATCTTCAAAGCTGGGTCTAGTTTGATTGAGCATATTCGTCGTATACACACGGGCGAACGGCCGTTTCCTTGTGATCAATGTGATGAACGTTTCTTCAACGTAACGCATCTATCAGAACACATTAGATTGCACACGGAAGAACGGCCCTACCCGTGTGAACAGTGCGACAAAACGTTTGTGACGGCACTAGCAATGAAACGCCATTTTCGAACGCATAACGCGCACGAATTATCCAAACCATGCAAATGTACCTACTGTCCGAAAGCGTTTCGCTCAAAATCCGAACTGAGACTACATTTAAATCGACATGAAGGTATAAAACCGTTCACGTGTGAACATTGTGATAAAGGTTTCGCAGCACGAAATCAACTAGTTCAACATGTGAAATCACATACAGGCGAACGTCCATATCCATGCAATTTATGCGATAAGAAATTCGCTAAAAACCAATCGTTGCTGTTGCATATTCGCTCGCACAACGATAACCGGCCGTTTTCTTGCGAACTGTGCCCGTTAAAGTGCAAAAGTTTACATGAACTGCAACGACATTCGAAACAACATGTTAAAAAACCGGAAACGGACGatagtatttttaattgcGTTGAgtgtaatattaaatttattactaaaaatGAGTTTGATCACCATAATATTGTGCATATTGGCGTTCGTGATTATGCGTGTGGTATTTGTAATAGGAGTTTTCTGTATGCGGATGAGTTGACGCGGCATATAGAGCTGCATTCGGATGAGTcgataaaatttttttgtgaTACATGCGGCAAAGGTTTTATCACGGCGTCGAAGTTAAAGCAGCACGTTCGAGTACATGAGAGCAAGGGTAAAATACAAGATTGTAAATATTGCGGGAGGAGTTATAGTAGGATGTCTATGTTAGACAAGCATATTGTGGATAAACATAAAAACGAATCACTCAATTAG
- Protein Sequence
- MDPKQYATTKINEEIYKDELSINKIRECLIIENRFEDDYNPRELKIIKPEIMSVLSVTLGDSSINEESGKFELIDGDIQKIPLFSCTFCGRNFRFQSSVEIHMKRHEQKQYNCKVCTKIFPKLSTLVIHMKSHKNTRPYFCPYCDQRFTRTGALKLHLYSHSRNRKMYVCRFCNQRFSQKTHMVQHQYIHSKTKRFGCTTCEKRFICKEYLKRHIKGHIFNVNKPHSCHLCFKAFAKPQDLSEHIRRHTGERPFACKICEKMFYSKSDLNKHTRTHRSIRNISCTKCKRRFYTESEFRVHLKTHLDHKNFNCTSCDRHFNYPFEVRRHMRLHSGEKPFLCKVCNRGFAVSSNLYRHLRSHNPATGQLMCEVCNRTFKRPHYLKKHRETHTKIYSCEECSITLKNPYELKQHKRNVHKSNTCDYCKKIFKAGSSLIEHIRRIHTGERPFPCDQCDERFFNVTHLSEHIRLHTEERPYPCEQCDKTFVTALAMKRHFRTHNAHELSKPCKCTYCPKAFRSKSELRLHLNRHEGIKPFTCEHCDKGFAARNQLVQHVKSHTGERPYPCNLCDKKFAKNQSLLLHIRSHNDNRPFSCELCPLKCKSLHELQRHSKQHVKKPETDDSIFNCVECNIKFITKNEFDHHNIVHIGVRDYACGICNRSFLYADELTRHIELHSDESIKFFCDTCGKGFITASKLKQHVRVHESKGKIQDCKYCGRSYSRMSMLDKHIVDKHKNESLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01041077;
- 90% Identity
- iTF_01041077;
- 80% Identity
- -