Ning012642.1
Basic Information
- Insect
- Nebria ingens
- Gene Symbol
- -
- Assembly
- GCA_018344505.1
- Location
- JADQWA010000268.1:132531-134774[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 2.1e-05 0.0017 18.7 1.9 1 23 83 105 83 105 0.98 2 23 4.7e-07 3.8e-05 23.9 0.8 1 23 110 132 110 132 0.99 3 23 3.3e-05 0.0027 18.1 0.5 1 23 138 160 138 160 0.97 4 23 0.0012 0.096 13.2 4.0 1 23 167 189 167 189 0.97 5 23 0.0028 0.23 12.0 5.0 1 23 195 217 195 217 0.97 6 23 0.0011 0.087 13.3 8.1 1 23 225 247 225 247 0.97 7 23 2.2e-07 1.7e-05 25.0 2.1 1 23 253 275 253 275 0.98 8 23 5.8e-06 0.00047 20.4 1.2 2 23 282 303 281 303 0.97 9 23 1 84 3.9 0.9 1 13 309 321 309 325 0.86 10 23 0.19 15 6.3 0.7 10 23 346 359 344 359 0.92 11 23 4.4e-06 0.00036 20.8 3.3 2 23 376 397 375 397 0.96 12 23 0.00024 0.02 15.3 0.7 1 23 401 424 401 424 0.97 13 23 6e-05 0.0049 17.3 0.3 2 23 428 450 428 450 0.97 14 23 0.00016 0.013 16.0 1.1 1 23 456 478 456 478 0.98 15 23 3.9e-06 0.00032 21.0 0.4 1 23 484 506 484 506 0.98 16 23 1.4e-06 0.00011 22.4 3.3 2 23 516 537 515 537 0.96 17 23 5.3e-05 0.0043 17.4 1.0 1 23 543 565 543 565 0.98 18 23 3.8e-06 0.00031 21.0 0.6 1 23 571 593 571 593 0.98 19 23 0.014 1.1 9.8 4.9 1 23 599 621 599 621 0.97 20 23 0.0053 0.43 11.1 0.7 1 23 632 654 632 654 0.95 21 23 0.001 0.084 13.4 0.1 1 23 660 682 660 682 0.95 22 23 3.9e-05 0.0032 17.8 1.0 1 23 689 711 689 711 0.97 23 23 8e-05 0.0065 16.9 0.6 3 23 720 741 719 741 0.92
Sequence Information
- Coding Sequence
- ATGGATTCTAAACAATATGCATCAACAAAAATAAAAGAAGAAACAAACGACGAATTATTAATAAACAAAATAGAAGAAGTTTTAATAATTGAAAATCGATTTGAAGACGATTATAATCCTGGCGAACTAAAGATTATAAAACCGGAAATAATGTCCGTTTTGTCTGTAACATTAGGCGAATCTTCAATTAATGAAGAAACTAGTAAATTTGAACTAAATGAAGGAGATATACAAAAGATTCCATTATTTTCATGTACGGTATGCGGCCGAAATTTCCGATTTCAAAACAGCGTTGAAACACACATGAAGAGACATGCTCAAAAACAGTACAAGTGCAAGGTTTGTAATAAAGTATTTCCAAAATTATCTACATTAGTTATACATATGAAATCACATAAAAGTACTCGGCCCTACTTTTGTCCCTATTGTGATCAAAGGTTCGCAAGAACCGCTGCTTTGAAACTGCATCTATATTCGCATTCACGCAAACGTAAAATGTATGTTTGTCGGTTTTGCAAACAGAGATTTTCACAAAAAGCGCATATGATTCAACACCAATTTATCCATTCGAAAACTAAACGATTTGCTTGCACCAAATGTGAAAAACGATTTATTTGTAAAGAGTATTTAAAGCGTCATTTACAACGACATATTCTTAACGTAAACAAACCCCATTGTTGCCATTTATGTAATAAAAAATTTTCGAAAGCGCAAGATTTATCCGAACATTTACGTCGACATACCGGTGAACGACCATTCGCATGTAAAATTTGTGAGAAAATGTTTTATAGTAAATCAGATTTAAACAAACACACCCGCACACATCGTAGTATCCGTAACATACCTTGTACGAAATGCAAACGAAGATTCTACACTGAATCCGAGTTGAGAGTTCACTTAAAAACACATTTAGATAATAAAAACTTCAATTGCACTAGATGCGATCGTCAATTTAATTACCCTTTCGAAGTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGTTTCGCGGTTTCTTCCCATCTATACCGCCATCTTAGATCACATAACCCTGATGATTCAAACGCTTTAAAAAACCCGGCAACAGGACAACTAATGTGTGAAGTTTGCAACAGAACTTTTAAACGTCCACATTATTTAAAGAAACACCGCGAAACTCACACAAAAGTTTACAGCTGCGAACAATGCTCAATAACACTTAAAAATCCGTACGAATTAAAGCAACATAAACGAAACGTTCATAAATCGAATACTTGTGATTATTGCAAAAAAGTCTTCAAAGCTGGGTCTAGTTTGATTGAACATATTCGACGTATACACACGGGCGAACGACCGTTTCCGTGTGATCAATGTGATGAACGTTTTTTCAACGTAACTCATCTATCAGAACACATTAGACTTCATACAGAAGAACGGCCATACCCGTGTGAAGAATGCGACAAAACGTTTGTGACGGCGTTAGCAATGAAACGCCATTTTCGGACACATAACGCGCACGAATTATCTAAACCATGCAAGTGTACCTACTGTCCGAAAGCTTTTCGTTCAAATTCAGAGCTACGATTGCATTTGAATCGGCATGAAGGTATCAAACCGTTCACATGTGAACATTGTGATAAAGGTTTTGCAGCACGGAATCAACTGGTTCAACACGTAAAATCACATACAGGTGAGCGTCCTTACCCATGCAATTTATGCGATAAAAAATTCGCTAAAAACCAATCGTTGCTGTTGCATATTCGCTCTCACAACGATAACCGGCCATTTTCTTGCGAATTGTGTCCGTTGAAATGCAAAAGTTTACATGAACTTCAACGTCATTCGAAACAACATGTTAAAAAACCGGAAGCCGATGATAGTATTTTTAATTGTGTTGAATGTAATATTAAATTTATTACTCAAAATGAGTTAGATCATCATAATATTGTGCATATTGGAATTCGCGATTATGCGTGTAGTATTTGCAGTAGGACTTTTCTGTATGCGGATGAGCTAACGCGGCATATAGGCTTGCATTCGGATGAGTCGATTAAATTTTTTTGTGATACTTGCGACAAGGGATTCAGCACGGGGTCGAGGTTGAAACAGCATGTTAGAGTACATGAAAGTAATGGTAAAATACAAGATTGTAAATTTTGCGGGAGGAGTTATAGTAGGATGTCTATGTTAGAAAAGCATATTGCGGATAAACATAAAAATGAACAACTCAATTAG
- Protein Sequence
- MDSKQYASTKIKEETNDELLINKIEEVLIIENRFEDDYNPGELKIIKPEIMSVLSVTLGESSINEETSKFELNEGDIQKIPLFSCTVCGRNFRFQNSVETHMKRHAQKQYKCKVCNKVFPKLSTLVIHMKSHKSTRPYFCPYCDQRFARTAALKLHLYSHSRKRKMYVCRFCKQRFSQKAHMIQHQFIHSKTKRFACTKCEKRFICKEYLKRHLQRHILNVNKPHCCHLCNKKFSKAQDLSEHLRRHTGERPFACKICEKMFYSKSDLNKHTRTHRSIRNIPCTKCKRRFYTESELRVHLKTHLDNKNFNCTRCDRQFNYPFEVTXXXXXXXXXXXXXXXXXXXGFAVSSHLYRHLRSHNPDDSNALKNPATGQLMCEVCNRTFKRPHYLKKHRETHTKVYSCEQCSITLKNPYELKQHKRNVHKSNTCDYCKKVFKAGSSLIEHIRRIHTGERPFPCDQCDERFFNVTHLSEHIRLHTEERPYPCEECDKTFVTALAMKRHFRTHNAHELSKPCKCTYCPKAFRSNSELRLHLNRHEGIKPFTCEHCDKGFAARNQLVQHVKSHTGERPYPCNLCDKKFAKNQSLLLHIRSHNDNRPFSCELCPLKCKSLHELQRHSKQHVKKPEADDSIFNCVECNIKFITQNELDHHNIVHIGIRDYACSICSRTFLYADELTRHIGLHSDESIKFFCDTCDKGFSTGSRLKQHVRVHESNGKIQDCKFCGRSYSRMSMLEKHIADKHKNEQLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01041077;
- 90% Identity
- -
- 80% Identity
- -