Nsal003054.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nebria salina
Gene Symbol
ZNF236
Assembly
GCA_944039265.1
Location
CALUEJ010000017.1:403315-409289[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 7.5e-05 0.0073 17.6 3.3 1 23 152 174 152 174 0.99
2 25 0.56 54 5.4 0.3 1 23 180 202 180 202 0.97
3 25 5.2e-07 5.1e-05 24.4 0.5 2 23 208 229 208 229 0.97
4 25 0.0045 0.43 12.0 0.2 1 23 235 257 235 257 0.97
5 25 9.5e-05 0.0092 17.2 0.9 2 23 269 290 268 290 0.95
6 25 6.3e-05 0.0061 17.8 2.4 1 23 315 337 315 337 0.98
7 25 7.6e-07 7.4e-05 23.8 0.4 1 23 343 365 343 365 0.99
8 25 1.5e-05 0.0015 19.8 0.3 1 23 371 394 371 394 0.97
9 25 0.00079 0.077 14.4 2.1 1 23 404 427 404 427 0.97
10 25 9.3e-06 0.0009 20.4 1.1 3 23 513 533 511 533 0.96
11 25 2e-06 0.00019 22.6 1.7 1 23 539 561 539 561 0.99
12 25 4.3e-06 0.00042 21.5 0.6 2 23 568 589 567 589 0.97
13 25 0.0016 0.16 13.4 2.6 1 23 595 617 595 617 0.98
14 25 0.0025 0.25 12.8 4.0 1 23 669 691 669 691 0.98
15 25 0.00012 0.012 16.9 2.9 1 23 697 719 697 719 0.99
16 25 0.00014 0.014 16.7 1.0 1 23 725 747 725 747 0.97
17 25 0.036 3.5 9.1 4.5 1 23 753 775 753 775 0.95
18 25 0.00073 0.071 14.5 3.2 3 23 1109 1129 1107 1129 0.96
19 25 5.4e-08 5.2e-06 27.5 1.7 2 23 1181 1202 1180 1202 0.98
20 25 1.2e-05 0.0011 20.1 2.3 1 23 1208 1230 1208 1230 0.99
21 25 0.0003 0.029 15.7 0.4 1 23 1236 1258 1236 1258 0.98
22 25 0.044 4.3 8.9 6.7 1 23 1264 1286 1264 1286 0.98
23 25 3.5e-05 0.0034 18.6 0.6 3 23 1427 1447 1426 1447 0.97
24 25 0.00029 0.028 15.7 4.8 1 23 1453 1475 1453 1475 0.96
25 25 7.7e-06 0.00075 20.7 0.6 1 23 1481 1504 1481 1504 0.97

Sequence Information

Coding Sequence
atgagcAACGACGAAACGTTTCCAGTGTTACAAAACAACACAAACGAAACTGTTACATTAATCACTTTGCctcttcaaatatttcaacatgGGACACAGCAACAGAATCTAAGTGTTGATCGgccaatattatttaaatcactACCTGATGGATCAATAATCATCGATACAAATCAGTTTTACAATGATGACAATATTCCAGCAGCTGTTGCTATTACAGATATAAGCGTAGATGTTGAGAAACCAAATGATTTTATTGGAAAAGAGATTGTTGGTATCGaagataaaaatgaatctATGATcgCTGAAAAACCGAGTGTATCTTTGGAGGTTCATGATAAGAATAAGCCGAAAGTAcggtatttaaataataaaattaaacaaaattgtcgGAATCCGGGGCGGCCGCGCAAAGATGGAATTAAACCTGAAATTACCGAAAAATCCggaccatttaaatgtaaattctgtGATAAGGAATTTCAAAAATGGCGTTTATTAAATCGGCATGAGAAAACACATATAAATGAGAAGAAATTCAATTGTCTTAAATGCGCAGCCTCCTTTAATATTATGtccAATTACCTGCTACACTTAGCTACTCATAATACAGATGACCCAACATGTCCAGAATGTGGGAAAAAATTCACAAGAAATGCTAGTTTAAAAGCGCATTTAATGTACCATGAGAAAGAAGAGACATTTTATTGTGAAGAATGTGATGTCTCGTTTCAAACTGAGACTGAAATGGAATTACATTTAAAAGGACATGGAAAAGCGAAAAAAATCGAAACAGATTCGTTACAGTGTAAATATTGCCAGTTGACATTCGAAGTTCAATCCGAATTGAAGAAACATCTCAGCGAACACAATAAAatGAAAAGCATTTTGCAAGTTCCAAAACGTAAAATCCAACGTAAATCTATACCGATCGAACGCAAACATCAGTGTAAAATATGCTTAAAAGCGTTTCAAAAACAAAGTCAAATTGAACGTCATATGCGAGTACATAGTGGTGAGAAACCTTATgagTGTAAAGAATGTGATAGGGGATTCAGTCAAAAAGGATCACTTTTGATTCATATGAACCGACATACTGGAATAAAACCGTATAAATGTGCTTTATGCCCAGCGAAATTTAGTCAAAAAGGAAACCTTCGTGCGCATATCTCAAAAACGCACTCAATTCCTGCTGGAGGCGCTAATGTGTTCTCCTGTTCAGAATGCACTTGCGTGTTTACACGTTTGGGCAGTTTGAACGGACATATGACGCGCAACCACCCCAAACAAAAGGAGAACGATATTAAATCAGTGATGTCTCAACTGGCCGCAATGCAAAATCATATGACAATCGCTGACGATATTCTACAACAAGCAATTGCACGCTCTGATTTACCTCAATCGCAAAACAGCGACGATAAGTTACAAAATAGTCCGACTGCGACTTATGTAACGCTCGCGGATTTAGGGATAGATGGTACTATGCGGCggtatattattaaacaaagaCAAGTTGGCGATATTCGCTGGCATTTATGTTCGTTTTGTccaaaagaatttaaaaaaccgTCGGATTTGGTTCGCCATATTAGGGTTCATACACGAGAAAAGCCGTACAAAtgtaaGGTGTGTTCGCGTTCATTCGCTGTGAAATCTACGTTAACTAGTCATATTAAAACTCATAGAAAggttaaaaaaattcaatgtaAATATTGCCCGAAATATTACAGCACTTGGAGCAGTTTAAATGTGCACGCAAGaAAGCACACAGGTGTtaaaccatacaaatgtacaGTTTGTAGCAAAACATTTCGCAGTACGTCAATACTAAaacaacattttcaaattcatttaacgAGTGTTAAAGATACGTTATACTCAAAAGACCCGcaatgtgaaataataatgcaacaacctatatatattagtaacAAAGGTCTACAATCGGTTGGAGTACCGTTAAAAAAACGTCCTTTAATTGAAGCAGGTGCCAAAAATCGACCGTATACTTGTTTAGTTTGTAACGCAGGTTTCCGCAAACTAAGTCATTTGAAACAACACCATATACGGCATACAGGAGAGCGTCCATTTCGTTGCCACTTATGTTTTCGTAGTTTCTCATCAAGTGGCGTTTTAAAATCACACATTTTAACACATAGTGGGGCAAAACCGTACAGTTGCGTTATGTGCCAAAAGAACTTTGCAACAAATGGTAGTTTACGACGTCATTTTGAATCGCACAGCAACGTGCGGCCGTTTTTATGCCCGTACTGTTTTAAGAGCTTTAAGACTGTTCTAAGTTGTCGAAAACATATGAAAATACATAAACTCGAGTTGAGCCTACAGTTGCAAGCCAGTAAGGATTGTGGCTACACAAACAGCGATTTAGTACAACCTAAACCGAATGAGTTGCCATATCCACCTGATTTAACTGATACTATAGATGATGAGCCGTTCGTTTTAGTTAACCAGAATGAAGAAATGGTTGATGATCCTGCTCAGCAAGAACTGGTTACACAAACGCTTAGAGCCGATCAAACTGGAACGGTTGTATTACCGGTTATAGCAAATCAGGAAAATTTAACGCAAGAAAATATGCAGGAAATTGAAGATACTTTGAATAATCAAATGATGGATATTATCGGAGATGACAATTATATGAATTCGACGGCATATTTGAAGAAAATTGGTCCAGATGAACCTATTGCAACTACAGATGAATTAGTTAATACATTAACTGAAAATAGTGCTAAATCAATAGATGAAAGTGCGTTCTTGTATCAACATGTTATCGTGAATTTGAATCCAGAAACAGAACAAATGTTTGATAACGTTGGGATTGATAATATTCTATCTCAAGTTAAATTACAaaACGATTCGCTATTTCTAACTGATCTAAACtcgataaatataaatgaaactaATAGTATTTTATCATATCAAATTACACAGCAAACTGACTTACATCAGAATCAAATGTTATTGCAACTTGAACCAGAATCAACACAAGTTGAACAAACAATCAATTTAGAGCAATCAATTAATTTAGAGCAATCAATTAATTTGGAGCAATCAATAAATTTGGAGCAAACAATTAATTTGGAGCAATCAATCAATTTAGAACCAAGCTTACAAATCAAATTACAAGCAATGGAAGGATTTTTGACTTCAAATCAACCAGAGCCAAATATTCTATCAGAATCAGCTCAATTTTTGACTCAAACTGAAGATTTAACTCAAACTAAAAATCTTTTACTAAACGAGCCTGAACAAGCTCAAACTACTATTGAAGAAGATATTATAACAGATGCTATGGATGTAATATGTAATTTgtgtaaattgaaatttaaaaataagtcaGATTTAAAAGTGCATCGCTGTCTGCATTTTGTTGATGTTGATGTGAATGCAACGAATGAGAATGGATTAAGCGAAACATTTAATATGCCGACGAGTGAAGTTGTTTACGATTTTGGGAGTTCAATGGATCCAATAGAAACTGTAGAAATATTGCGTAATGATGTACCAGTTTACCGAAATCAGTGCACTTATTGTCCGAAAACATTTCGAAAACCATCTGATTTGCAACGACACTTAAGGACGCATACAGGAGAGCGTCCGTTCAAATGCCACGAATGTGCAAAAAGCTTTTCGCTCAAGTCGACTTTAGAATCGCATGTTCGAGTCCATCAAGAAAGAAAAAGTTTCACGTGTAACGTTTGCAGTTCAttatttgcaacaaaaggaAGTTTAAATGTTCATATGCGACTTCACACtggcgCAAAACCATACAAATGCTGCTTGTGCCATCTACGATTCCGTACTTCGGGTCATCGTAAGGCCCACTTAGCTGTGCATTATAAAGAAGCTTCGAAAACAGGCAAACTTCCCCATGAAATTATAACACGTAAAGCAAAAATGTCGGAACTCATGGACGGAGTCCAGAGCCTGATCGAAGATTTAAATCCTCAAGAAGACGACAAAGATCCTGATGGTGAACTAGAGGAAATTGAACATCCGAATCAAGTGAAATCTTACGAAAATATCGTGTTGGATACTCAAGATTCACAGTTAATGCAGTTCGAGGTTCAAACCAACGAACAAGGAcacattttaaacataaaaccAGCCGCttccaatattttaattgtcgATAATTCGGTTAAGAATCAATTAATGCCACAAGTTGAGTTCGATGACAAAACGAAAAAAGATATTGAGTTTTTTATCAGTGAGAAATACATGAAGCAAAGCATCGACtcgaagaagaagaaaatatgTGATGTTTGCCAAAAGGAATTTACTTCAAATTATCAACTTGCGCGgcataaaaaaatacacagtAACGAACGGGAACATGCGTGTACGCATTGTGCAAGAACGTTCACTCAAAAAAGTTCGTTGGATACTCATCTTAATACCCATTTCGGCACAAGGCCGTTTCCATGTCCTTACTGTTCGAATACATTTAGTCAAAGTGGTAACTTGAAAACGCATGTTAAAAGAATCCACAATTTAATCATCGATAAAACTGTAAATAGAGATGCAGATAATGAAGAAGCTAAtaccaatttattaaataatagttaa
Protein Sequence
MSNDETFPVLQNNTNETVTLITLPLQIFQHGTQQQNLSVDRPILFKSLPDGSIIIDTNQFYNDDNIPAAVAITDISVDVEKPNDFIGKEIVGIEDKNESMIAEKPSVSLEVHDKNKPKVRYLNNKIKQNCRNPGRPRKDGIKPEITEKSGPFKCKFCDKEFQKWRLLNRHEKTHINEKKFNCLKCAASFNIMSNYLLHLATHNTDDPTCPECGKKFTRNASLKAHLMYHEKEETFYCEECDVSFQTETEMELHLKGHGKAKKIETDSLQCKYCQLTFEVQSELKKHLSEHNKMKSILQVPKRKIQRKSIPIERKHQCKICLKAFQKQSQIERHMRVHSGEKPYECKECDRGFSQKGSLLIHMNRHTGIKPYKCALCPAKFSQKGNLRAHISKTHSIPAGGANVFSCSECTCVFTRLGSLNGHMTRNHPKQKENDIKSVMSQLAAMQNHMTIADDILQQAIARSDLPQSQNSDDKLQNSPTATYVTLADLGIDGTMRRYIIKQRQVGDIRWHLCSFCPKEFKKPSDLVRHIRVHTREKPYKCKVCSRSFAVKSTLTSHIKTHRKVKKIQCKYCPKYYSTWSSLNVHARKHTGVKPYKCTVCSKTFRSTSILKQHFQIHLTSVKDTLYSKDPQCEIIMQQPIYISNKGLQSVGVPLKKRPLIEAGAKNRPYTCLVCNAGFRKLSHLKQHHIRHTGERPFRCHLCFRSFSSSGVLKSHILTHSGAKPYSCVMCQKNFATNGSLRRHFESHSNVRPFLCPYCFKSFKTVLSCRKHMKIHKLELSLQLQASKDCGYTNSDLVQPKPNELPYPPDLTDTIDDEPFVLVNQNEEMVDDPAQQELVTQTLRADQTGTVVLPVIANQENLTQENMQEIEDTLNNQMMDIIGDDNYMNSTAYLKKIGPDEPIATTDELVNTLTENSAKSIDESAFLYQHVIVNLNPETEQMFDNVGIDNILSQVKLQNDSLFLTDLNSININETNSILSYQITQQTDLHQNQMLLQLEPESTQVEQTINLEQSINLEQSINLEQSINLEQTINLEQSINLEPSLQIKLQAMEGFLTSNQPEPNILSESAQFLTQTEDLTQTKNLLLNEPEQAQTTIEEDIITDAMDVICNLCKLKFKNKSDLKVHRCLHFVDVDVNATNENGLSETFNMPTSEVVYDFGSSMDPIETVEILRNDVPVYRNQCTYCPKTFRKPSDLQRHLRTHTGERPFKCHECAKSFSLKSTLESHVRVHQERKSFTCNVCSSLFATKGSLNVHMRLHTGAKPYKCCLCHLRFRTSGHRKAHLAVHYKEASKTGKLPHEIITRKAKMSELMDGVQSLIEDLNPQEDDKDPDGELEEIEHPNQVKSYENIVLDTQDSQLMQFEVQTNEQGHILNIKPAASNILIVDNSVKNQLMPQVEFDDKTKKDIEFFISEKYMKQSIDSKKKKICDVCQKEFTSNYQLARHKKIHSNEREHACTHCARTFTQKSSLDTHLNTHFGTRPFPCPYCSNTFSQSGNLKTHVKRIHNLIIDKTVNRDADNEEANTNLLNNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01040287;
90% Identity
iTF_01039439;
80% Identity
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