Ning010526.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nebria ingens
Gene Symbol
ZNF236
Assembly
GCA_018344505.1
Location
JADQWA010000225.1:897620-906702[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 4.8e-05 0.0039 17.6 3.3 1 23 151 173 151 173 0.99
2 25 0.15 12 6.6 0.2 1 23 179 201 179 201 0.97
3 25 3.3e-07 2.7e-05 24.4 0.5 2 23 207 228 207 228 0.97
4 25 0.016 1.3 9.6 0.2 1 23 234 256 234 256 0.96
5 25 6.1e-05 0.0049 17.2 0.9 2 23 268 289 267 289 0.95
6 25 4e-05 0.0033 17.8 2.4 1 23 314 336 314 336 0.98
7 25 4.9e-07 3.9e-05 23.8 0.4 1 23 342 364 342 364 0.99
8 25 9.6e-06 0.00078 19.8 0.3 1 23 370 393 370 393 0.97
9 25 0.0005 0.041 14.3 2.1 1 23 403 426 403 426 0.97
10 25 5.9e-06 0.00048 20.4 1.1 3 23 512 532 510 532 0.96
11 25 1.3e-06 0.0001 22.5 1.7 1 23 538 560 538 560 0.99
12 25 2.7e-06 0.00022 21.5 0.6 2 23 567 588 566 588 0.97
13 25 0.001 0.083 13.4 2.6 1 23 594 616 594 616 0.98
14 25 0.0016 0.13 12.8 4.0 1 23 668 690 668 690 0.98
15 25 7.7e-05 0.0063 16.9 2.9 1 23 696 718 696 718 0.99
16 25 0.00013 0.011 16.2 1.0 1 23 724 746 724 746 0.97
17 25 0.023 1.9 9.1 4.5 1 23 752 774 752 774 0.95
18 25 0.00047 0.038 14.5 3.2 3 23 1115 1135 1113 1135 0.96
19 25 3.4e-08 2.8e-06 27.5 1.7 2 23 1187 1208 1186 1208 0.98
20 25 7.6e-06 0.00061 20.1 2.3 1 23 1214 1236 1214 1236 0.99
21 25 0.00019 0.015 15.7 0.4 1 23 1242 1264 1242 1264 0.98
22 25 0.028 2.3 8.9 6.7 1 23 1270 1292 1270 1292 0.98
23 25 5.1e-05 0.0041 17.5 0.3 3 23 1433 1453 1432 1453 0.97
24 25 0.00018 0.015 15.7 4.8 1 23 1459 1481 1459 1481 0.96
25 25 8.7e-06 0.00071 19.9 0.7 1 23 1487 1510 1487 1510 0.96

Sequence Information

Coding Sequence
ATGAGCAACAACGAAACGTTTCCAGTGTTACAAAACAATACAAACGAAACTGTTACATTAATCACTTTGCCCCTTCAAATATTTCAACATGGGACACAGCAACAGAATTTAACTGTTGATCGGCCAATATTATTTAAATCACTACCGGATGGTTCAATAATTATCGATACAAATCAGTTTTATGATGACAATATTCCAGTAGCTATTGCTAATACAGATATTAGTACAGATGTTGAGAAACCGAATGATTATATTGAAAAAGCGATTGCTGATATCGAAGATAAAACTGAATCTATAATTGCTGAAAAACCAAGTGTGTCTTTGGAGATAAATGATAAAAATAAGCCGAAAGTACGCTATTTAAATAATAAAATTAAACAAATTTGTCGTAATCCGGGACGGCCTCGCAAAGATGGAATCAACCCTGAAAGTAATGAAAAAACTGGCCCATTTAAATGTAAATTTTGTGATAAGGAATTTCAAAAATGGCGTTTGTTAAATAGGCATGAAAAAACACATATAAATGAGAAGAAATTCAATTGTCTTAAATGTGCAGCCTCCTTTAATATTTTGTCCAATTACCTACTACATTTAGCTACACACAATACAGACGATCCAACATGTCCAGAATGTGGGAAAAAATTCACAAGAAATGCAAGTTTAAAAGCGCATTTAATGTATCATGAAAAAGAAGAAACATTTTATTGTGAAGAGTGTGATGTTTCGTTTCAAACTGAGACTGAAATGGACTTACATTTAAAAGGACATGGAAAAGCGAAAAAAATCGAAATAGATTCGTTACAGTGTAAATATTGTCAATTGACATTCGAAGTCCAATCAGAATTGAAGAAACATCTCAGCGAACACAATAAAATGAAAAGCATTTTACAAGTTCCAAAACGTAAAATCCCACGTAAATCTATACCGATCGAACGCAAACATCAGTGTAAAATATGCTTAAAAGCGTTTCAAAAACAAAGTCAAATTGAACGGCATATGAGAGTACACAGCGGTGAGAAACCTTATGAGTGTAAAGAATGTGATAGAGGATTTAGTCAAAAAGGATCACTGTTGATTCATATGAACCGACATACTGGAATAAAACCGTACAAATGTGCTTTATGTCCGGCGAAATTTAGTCAAAAAGGAAACCTTCGTGCGCATATCTCAAAAACGCACTCAATTCCTGCTGGAGGCGCAAATGTGTTCTCCTGTTCAGAATGCACATGCGTGTTTACACGTTTAGGCAGTTTGAACGGGCACATGACGCGCAATCACCCCAAACAAAAAGAGAACGATATTAAATCTGTTATGTCACAACTTGCCGCCATGCAAAATCACATGACAATCGCTGACGATATTTTGCAACAGGCAATTGCACGTTCTGACTTGCCTCAGTCACAAAACGGCGACGATAAGTTACAAAATAGTCCTACTGCGACGTATGTGACGCTCGCGGATTTGGGGATAGATGGTACTATGCGGCGATATATTATTAAACAAAGACAAGTTGGCGATATTCGCTGGCATTTATGTTCGTTTTGTCCGAAAGAATTTAAAAAACCCTCGGATTTGGTTCGGCATATTAGAGTTCATACACGAGAAAAGCCGTATAAATGTAAGGTATGTTCGCGTTCTTTCGCTGTGAAATCTACGTTAACTAGTCATATTAAAACTCATAGAAAGGTTAAAAAAATTCAATGTAAATATTGCCCGAAATATTACAGTACTTGGAGCAGTTTAAATGTACACGCAAGAAAGCATACAGGTGTTAAGCCATACAAATGTACAGTCTGTAGCAAAACATTTCGCAGTACGTCAATACTAAAACAACATTTTCAAATTCATTTAACTAATGTTAAAGATACGTTATACACAAAAGATCCACAATGTGAAATAATAATGCAACAACCTATATATATTAGTAACAAAGGTCTACAATCGGTTGGTGTACCATTAAAAAAACGTCCTCTAATTGAAGCAGGTGCTAAAAATCGACCTTATACTTGTTTGGTTTGTAACGCAGGTTTCCGCAAACTAAGCCATTTGAAACAACACCATATACGGCACACAGGAGAGCGTCCATTTCGTTGTCACTTATGTTTTCGTAGTTTCTCATCAAGTGGCGTCTTAAAATCACACATTTTAACACATAGTGGGGCTAAACCGTACAGTTGCGTCTTGTGCCAAAAGAACTTCGCAACGAATGGTAGTTTACGACGTCATTTCGAATCGCACAGCAACGTAAGACCATTTCTATGCCCATACTGTTTCAAAAGCTTCAAAACTGTTCTAAGTTGTCGGAAACATATGAAAATACACAAACTCGAATTGAGCTTACAATTGCAAGCCAGTAAAGATTGTGGTTACACAAACCCCGATTTGGTTCAACCTAAACCTAATGAGTTACCATATCCACCTGATTTAGCCGACACTATAGATGATGAACCGTTCGTTTTGGTTAACCAGCATCTGGTTAGCCAGACTGAAGAAATGATTGATGATCCCGCTCAACAAGAATTGGTTACACAAACGCTAAGAGCCGATCAAACTGGAACGGTTGTATTACCGGTAATTGCGAATCAAGAGAATTTAACGCAAGAAAATATGCAAGAAATTGAAGATACTTTGAATAATCAAATGCTGAATATAATCGGAGATGAAAATTATATTAATTCGACGGCGTATTTGAAGAAAATCCCGCCAGATGAACCTATCGCAAGTACAGATGAATTAGTTAATACATTAACTGAAAATAGCGCTAAATCAATAGATGAAAGCGCGTACTTGTATCAACATGTTATCGTGAATTTGAATCCAGAAACGGAACAAATGTTTGATAATGTTGGGATTGATAATATTTTATCTCAAGTTAAATTACAAAACGACTCACTATTTCTAACCGATCTAAACTCAATAAATATAAATGAAACTAATAGTATTTTATCATATCAAATCACACAGCAAACTGACTTACATCAAAATCAAATGCTAATGCAACTTGAGCCAGAATCAACACAAGTTGAACAATCAATTAATATAGATCAGTCAATCAATTTAGAGCAATCAATTAACTTAGAGCAATCAATCAATTTAGAACAATCAATCAATTTGGAGCAATCAATCAATTTAGAACCAAACTTACAAATCAAATTACAAGCAATGGAAGGATTTTTGAGCTCAAATCAATCAATTTCAGAGCCAAATATTCTGTCAGAATCAGCGCAATTTTTGACTCAAACTGAGGATTTAATTCAAACAAAAAATATTTTACAAAATGAGCCTGAACAAATACAAACTGTGAACGAAGAAGACATTATAACTGATGCTATGGATGTGATATGTAATTTGTGTAAATTAAAATTTAAAAATAAGTCAGATTTAAAAGTACATCGCTGTTTGCATTTTGTTGATGTCGATGTGAATACAACGAATGAGAATGCATTGAGTGAAACATTTAATTTACCAACGAGTGAAGTTGTTTACGATTTCGGGACTTCAATGGATCCAATAGATACTGTAGAGATACTGCCTAATGATGTCCCAGTTTACCGAAATCAGTGCACTTATTGTCCGAAAACATTTCGAAAACCATCTGATTTGCAGCGCCACTTACGAACGCATACAGGAGAACGTCCGTTCAAATGTCACGAATGTGCGAAAAGCTTCTCGCTCAAGTCGACTTTAGAATCCCATGTTCGAGTCCATCAAGAAAGAAAAAGTTTCACGTGTAACGTTTGCAGTTCATTATTTGCAACAAAAGGAAGTTTAAATGTTCATATGAGACTTCACACTGGTGCAAAACCATACAAATGCTGTTTGTGCCATCTAAGATTCCGTACTTCGGGTCATCGTAAGGCCCATTTGGCTGTGCATTATAAAGAAGCTTCGAAAACAGGCAAACTTCCCCACGAAATTATAACTCGCAAAGCAAAAATGTCGGAACTTATGGACGGAGTTCAGAGCCTAATCGAAGATTTAAATCCTCAAGAAAACGACAAAGACCCTGATGGCGAACTAGAAGAAATTGAACATCCGAATCCAGTTAAATCTTACGAAAATATCGTATTAGATACTCAAGATTCACAGTTAATGCAATTCGAGGTTCAAACCAACGAACAAGGGCACATTTTAAACATAAAACCAGCCGCTTCTAATATTTTAATTGTCGATGAATCAATTAAAAATCAATTGATGTCACAAGTTGAGTTTGATGATAAAACAAAAAAAGATATTGAGTTTTTTATCAGTGAGAAATACATGAAACAAAACATCGACTTGAAGAAGAAGAAAATATGCGATGTTTGCCAAAAAGAATTTGCTTCAAATTATCAATTAGCTCGACATAAAAAAATACATAGTAACGAACGTGAACATGCGTGTACGCATTGCGCAAGAACATTTACACAAAAAAGTTCGTTGGATACTCACCTGAATACCCATTTCGGTACACGGCCGTTTGCATGTCCGTACTGTTCGAATACATTTAGTCAAAGTGGTAACTTAAAAACGCATGTTAAAAGAATACACAATTTAACTATTGATAAAACAGTAAATTTAGGTGCTGATAATGAAGAAACTAATGCAGATTTATTAAATAATAGTTAA
Protein Sequence
MSNNETFPVLQNNTNETVTLITLPLQIFQHGTQQQNLTVDRPILFKSLPDGSIIIDTNQFYDDNIPVAIANTDISTDVEKPNDYIEKAIADIEDKTESIIAEKPSVSLEINDKNKPKVRYLNNKIKQICRNPGRPRKDGINPESNEKTGPFKCKFCDKEFQKWRLLNRHEKTHINEKKFNCLKCAASFNILSNYLLHLATHNTDDPTCPECGKKFTRNASLKAHLMYHEKEETFYCEECDVSFQTETEMDLHLKGHGKAKKIEIDSLQCKYCQLTFEVQSELKKHLSEHNKMKSILQVPKRKIPRKSIPIERKHQCKICLKAFQKQSQIERHMRVHSGEKPYECKECDRGFSQKGSLLIHMNRHTGIKPYKCALCPAKFSQKGNLRAHISKTHSIPAGGANVFSCSECTCVFTRLGSLNGHMTRNHPKQKENDIKSVMSQLAAMQNHMTIADDILQQAIARSDLPQSQNGDDKLQNSPTATYVTLADLGIDGTMRRYIIKQRQVGDIRWHLCSFCPKEFKKPSDLVRHIRVHTREKPYKCKVCSRSFAVKSTLTSHIKTHRKVKKIQCKYCPKYYSTWSSLNVHARKHTGVKPYKCTVCSKTFRSTSILKQHFQIHLTNVKDTLYTKDPQCEIIMQQPIYISNKGLQSVGVPLKKRPLIEAGAKNRPYTCLVCNAGFRKLSHLKQHHIRHTGERPFRCHLCFRSFSSSGVLKSHILTHSGAKPYSCVLCQKNFATNGSLRRHFESHSNVRPFLCPYCFKSFKTVLSCRKHMKIHKLELSLQLQASKDCGYTNPDLVQPKPNELPYPPDLADTIDDEPFVLVNQHLVSQTEEMIDDPAQQELVTQTLRADQTGTVVLPVIANQENLTQENMQEIEDTLNNQMLNIIGDENYINSTAYLKKIPPDEPIASTDELVNTLTENSAKSIDESAYLYQHVIVNLNPETEQMFDNVGIDNILSQVKLQNDSLFLTDLNSININETNSILSYQITQQTDLHQNQMLMQLEPESTQVEQSINIDQSINLEQSINLEQSINLEQSINLEQSINLEPNLQIKLQAMEGFLSSNQSISEPNILSESAQFLTQTEDLIQTKNILQNEPEQIQTVNEEDIITDAMDVICNLCKLKFKNKSDLKVHRCLHFVDVDVNTTNENALSETFNLPTSEVVYDFGTSMDPIDTVEILPNDVPVYRNQCTYCPKTFRKPSDLQRHLRTHTGERPFKCHECAKSFSLKSTLESHVRVHQERKSFTCNVCSSLFATKGSLNVHMRLHTGAKPYKCCLCHLRFRTSGHRKAHLAVHYKEASKTGKLPHEIITRKAKMSELMDGVQSLIEDLNPQENDKDPDGELEEIEHPNPVKSYENIVLDTQDSQLMQFEVQTNEQGHILNIKPAASNILIVDESIKNQLMSQVEFDDKTKKDIEFFISEKYMKQNIDLKKKKICDVCQKEFASNYQLARHKKIHSNEREHACTHCARTFTQKSSLDTHLNTHFGTRPFACPYCSNTFSQSGNLKTHVKRIHNLTIDKTVNLGADNEETNADLLNNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01039439; iTF_01041076;
90% Identity
iTF_01039439;
80% Identity
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