Nbre015882.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nebria brevicollis
Gene Symbol
ZNF236
Assembly
GCA_944739395.1
Location
CALYJC010000344.1:109259-115242[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 8.1e-05 0.0075 17.6 3.3 1 23 151 173 151 173 0.99
2 25 0.6 56 5.4 0.3 1 23 179 201 179 201 0.97
3 25 5.6e-07 5.2e-05 24.4 0.5 2 23 207 228 207 228 0.97
4 25 0.0048 0.45 12.0 0.2 1 23 234 256 234 256 0.97
5 25 0.0001 0.0095 17.2 0.9 2 23 268 289 267 289 0.95
6 25 6.8e-05 0.0063 17.8 2.4 1 23 314 336 314 336 0.98
7 25 8.2e-07 7.6e-05 23.8 0.4 1 23 342 364 342 364 0.99
8 25 1.6e-05 0.0015 19.8 0.3 1 23 370 393 370 393 0.97
9 25 0.00085 0.079 14.4 2.1 1 23 403 426 403 426 0.97
10 25 9.9e-06 0.00093 20.4 1.1 3 23 512 532 510 532 0.96
11 25 2.1e-06 0.0002 22.5 1.7 1 23 538 560 538 560 0.99
12 25 4.6e-06 0.00043 21.5 0.6 2 23 567 588 566 588 0.97
13 25 0.0017 0.16 13.4 2.6 1 23 594 616 594 616 0.98
14 25 0.0027 0.25 12.8 4.0 1 23 668 690 668 690 0.98
15 25 0.00013 0.012 16.9 2.9 1 23 696 718 696 718 0.99
16 25 0.00023 0.021 16.2 1.0 1 23 724 746 724 746 0.97
17 25 0.039 3.6 9.1 4.5 1 23 752 774 752 774 0.95
18 25 0.00078 0.073 14.5 3.2 3 23 1114 1134 1112 1134 0.96
19 25 5.8e-08 5.4e-06 27.5 1.7 2 23 1186 1207 1185 1207 0.98
20 25 1.3e-05 0.0012 20.1 2.3 1 23 1213 1235 1213 1235 0.99
21 25 0.00032 0.03 15.7 0.4 1 23 1241 1263 1241 1263 0.98
22 25 0.047 4.4 8.9 6.7 1 23 1269 1291 1269 1291 0.98
23 25 3.8e-05 0.0035 18.6 0.6 3 23 1432 1452 1431 1452 0.97
24 25 0.00031 0.029 15.7 4.8 1 23 1458 1480 1458 1480 0.96
25 25 8.3e-06 0.00077 20.7 0.6 1 23 1486 1509 1486 1509 0.97

Sequence Information

Coding Sequence
atgagcAACGACGAAACGTTTCCAGTGTTACAAAACAACACAAACGAAACTGTTACATTAATTACTTTGCCTcttcaaatatttcaacatgGGACACAGCAACAGAATCTAAGTGTCGATCGgccaatattatttaaatcacTACCTGATGGATCAATAATCATCGATACAAATCAGttttACAATGATGACAATATTCCAGCTGTTGCTATTACAGATATTAGTGTAGACGTTGAGAAACCAAATGATTTTATTGGAAAAGAGATTGTTGGTATCGAAGATAAAACTGAATCTATAATcGCTGAAAAACCGAGTGTATCTTTGGAGGTTCACGATAAGAATAAGCCTAAAGtacgatatttaaataataaaattaaacaaaattgtcGGAATCCGGGGCGACCGCGCAAAGATGGAATTAAATCTGAAATTACCGAAAAATCTGGGccatttaaatgtaaattttgtgATAAGGAATTTCAAAAATGGCGTTTATTAAATCGGCATGAGAAAACACATATAAATGAGAAGAAGTTCAATTGCCTTAAATGCGCAGCCTCTTTTAATATTATGtccAATTACCTGCTACACTTAGCTACTCATAATACAGATGACCCAACATGTCCAGAATGTGGGAAAAAATTCACAAGAAATGCTAGTTTAAAAGCGCATTTAATGTACCATGAAAAAGAAGAGACATTTTATTGTGAAGAATGCGATGTCTCGTTTCAAACTGAGACTGAAATGGAATTACATTTAAAAGGACATGGAAAAGCGAAAAAAATCGAAACAGATTCGTTACAGTGTAAATATTGCCAGTTGACATTCGAAGTCCAATCCGAATTGAAGAAACATCTCAGCGAACACAATAAAaTGAAAAGCATTTTGCAAGTACCAAAACGTAAAATCCAACGTAAATCTATACCGATCGAACGGAAACATCAGTGTAAAATATGCTTAAAAGCGTTTCAAAAACAAAGTCAAATTGAACGTCATATGCGAGTACATAGTGGTGAGAAACCTTATgagTGTAAAGAATGTGATAGGGGATTCAGTCAAAAAGGATCACTTTTGATTCATATGAACCGACATACTGGAATAAAACCGTACAAATGTGCTTTATGCCCAGCGAAATTTAGTCAAAAGGGAAACCTTCGTGCGCATATCTCAAAAACGCACTCAATTCCTGCTGGAGGCGCTAATGTGTTCTCCTGTTCAGAATGCACATGCGTGTTTACACGTTTGGGCAGTTTGAACGGGCATATGACGCGCAACCACCCCAAACAAAAAGAGAACGATATTAAATCAGTGATGTCTCAACTGGCCGCAATGCAAAATCATATGACAATCGCTGACGATATTCTACAACAAGCAATTGCACGCTCTGACTTACCTCAGTCGCAAAACAGCGACGATAAGTTACAAAATAGTCCGACTGCGACTTATGTAACGCTCGCGGATTTAGGTATAGATGGCACGATGCGGCggtatattattaaacaaagacAAGTTGGCGATATTCGCTGGCATTTATGTTCGTTTTGTCcgaaagaatttaaaaaaccgTCGGATTTAGTTCGCCATATTAGGGTTCATACACGAGAAAAGCCGTACAAAtgtaAGGTGTGTTCGCGTTCATTCGCTGTAAAATCTACGTTAACTAGTCATATTAAAACTCATAGAAAGGTTAAAAAAATTCAGTGTAAATATTGCCCGAAATATTACAGCACTTGGAGCAGTTTAAATGTGCACGCAAGaaaGCACACAGGTGTTaaaccatacaaatgtacAGTTTGTAGCAAAACATTTCGCAGTACGTCAATACTAAAACAACATTTTCAAATTCATTTAACGAGTGTTAAAGATACGTTATACTCAAAAGACCCGCAATGTGAAATAATAATGCAACAACCTATATATATTAGTAACAAAGGTCTACAATCGGTTGGAGTACCGTTAAAAAAACGTCCTTTAATTGAAGCAGGTGCTAAAAATCGACCGTATACTTGTTTAGTTTGTAACGCAGGTTTCCGCAAACTAAGTCACTTGAAACAACACCATATACGGCATACAGGAGAGCGTCCATTTCGTTGCCACTTATGTTTTCGTAGTTTCTCATCAAGTGGCGTTTTAAAATCACACATTTTAACACATAGTGGGGCAAAACCATACAGTTGCGTTTTGTGCCAAAAGAACTTTGCAACAAATGGTAGTTTACGACGTCATTTTGAATCGCACAGCAACGTACGGCCGTTTTTATGCCCGTACTGTTTTAAGAGCTTTAAGACTGTTCTAAGTTGTCGAAAACATATGAAAATACATAAACTCGAGTTGAGCCTACAGTTGCAAGCCAGTAAGGATTGTGGCTATACAAACAGCGATTTAGTACAACCTAAACCGAATGAGTTGCCATATCCACCTGATTTAACTGATACTATAGATGATGAGCCGTTCGTTTTAGTTAACCAGAATGAAGAAATGGTTGATGATCCAGCTCAACAAGAACTGGTTACACAAACGCTTAGAGCCGATCAAACTGGAACGGTTGTATTACCGGTTATAGCAAATCAGGAAAATTTAACGCAAGAAAATATGCAGGAAATTGAAGATACTTTGAATAATCAAATGATGGATATTATCGGAGATGACAATTATATGAATTCGACGGCATATTTGAAGAAAATTGGTCCAGATGAACCTATTGCAACTACAGATGAATTAGTTAATACATTAACTGAAAATAGTGCTAAATCAATAGATGAAAGTGCGTTCTTGTATCAACATGTTATCGTGAATTTGAATCCAGAAACAGAACAAATGTTTGATAACGTTGGgattgataatattttatctCAAGTTAAATTACaaaACGATTCGCTATTTCTAACTGATCTAAACtcgataaatataaatgaaactaATAGTATTTTATCGTATCAAATTACACAACAAACTGACTTACATCAGAATCAAATGTTATTGCAACTTGAACCAGAATCAACACAGGTTGAACAAACAATCAATATAgatcaatcaatcaatttaGAGCAATCAATTAATTTAGAGCAATCAATTAATTTGGAGCAATCAATAAATTTGGAGCAAACAATTAATTTGGAGCAATCAATCAATTTAGAACCAAGCTTACAAATCAAATTGCAAGCAATGGAAGGATTTTTGACTTCAAATCAATCAGAGCCAAATATTCTATCAGAATCAGCTCAATTTTTGACTCAAACAGAAGATTTAACTCAAACTAAAAATCTTTTACTAAACGAGCCTGAACAAGCTCAAACTActattgaagaagatattataACAGATGCTATGGATGTGATATGTAATTTgtgtaaattgaaatttaaaaataagtcAGATTTAAAAGTGCATCGCTGTCTGCATTTTGTTGATGTTGATGTGAATGCAACGAATGAGAATGGATTAAGCGAAACATTTAATATGCCGACGAGTGAAGTTGTTTACGATTTTGGGAGTTCAATGGATCCAATAGAGACTGTAGAAATATTGCGTAATGATGTACCAGTTTACCGAAATCAGTGCACTTATTGTCCGAAAACATTTCGAAAACCATCTGATTTGCAACGACACTTAAGGACGCATACAGGAGAACGTCCGTTCAAATGCCACGAATGTGCAAAAAGCTTTTCGCTCAAGTCGACTTTAGAATCGCATGTTCGAGTCCATCAAGAAAGAAAAAGTTTCACGTGTAACGTTTGCAGTTCAttatttgcaacaaaaggaaGTTTAAATGTTCATATGCGACTTCACACtggcgCAAAACCATACAAATGCTGCTTGTGCCATCTACGATTCCGTACTTCGGGTCATCGTAAGGCCCACTTAGCTGTGCATTATAAAGAAGCTTCGAAAACAGGCAAACTTCCCCATGAAATTATAACACGTAAAGCAAAAATGTCGGAACTCATGGACGGAGTCCAGAGCCTGATCGAAGATTTAAATCCTCAAGAAGACGACAAAGACCCTGATGGTGAACTAGAGGAAATTGAACATCCGAATCAAGTGAAATCTTACGAAAATATCGTGTTGGATACTCAAGATTCACAGTTAATGCAGTTCGAGGTGCAAACCAACGAACAAGGAcacattttaaacataaaaccAGCCGCTtccaatattttaattgtcgATGATTCGGTTAAGAATCAATTAATGCCACAAGTTGAGTTCGATGACAAAACGAAAAAAGATATTGAGTTTTTTATCAGTGAGAAATACATGAAGCAAAACATCGACtcgaagaagaagaaaatatGTGATGTTTGCCAAAAggaatttacttcaaattaCCAACTTGCGCGgcataaaaaaatacacagTAACGAACGGGAACATGCGTGTACGCATTGCGCAAGAACGTTCACTCAAAAAAGTTCGTTGGATACTCATCTTAATACCCATTTCGGCACAAGACCGTTTCCATGTCCTTACTGTTCGAACACATTTAGTCAAAGTGGTAACTTGAAAACGCATGTTAAAAGAATACACAATTTAATCATCGATAAAACTGTAAATAGAGATGCAGATAATGAAGAAGCTAATaccaatttattaaataatagttaa
Protein Sequence
MSNDETFPVLQNNTNETVTLITLPLQIFQHGTQQQNLSVDRPILFKSLPDGSIIIDTNQFYNDDNIPAVAITDISVDVEKPNDFIGKEIVGIEDKTESIIAEKPSVSLEVHDKNKPKVRYLNNKIKQNCRNPGRPRKDGIKSEITEKSGPFKCKFCDKEFQKWRLLNRHEKTHINEKKFNCLKCAASFNIMSNYLLHLATHNTDDPTCPECGKKFTRNASLKAHLMYHEKEETFYCEECDVSFQTETEMELHLKGHGKAKKIETDSLQCKYCQLTFEVQSELKKHLSEHNKMKSILQVPKRKIQRKSIPIERKHQCKICLKAFQKQSQIERHMRVHSGEKPYECKECDRGFSQKGSLLIHMNRHTGIKPYKCALCPAKFSQKGNLRAHISKTHSIPAGGANVFSCSECTCVFTRLGSLNGHMTRNHPKQKENDIKSVMSQLAAMQNHMTIADDILQQAIARSDLPQSQNSDDKLQNSPTATYVTLADLGIDGTMRRYIIKQRQVGDIRWHLCSFCPKEFKKPSDLVRHIRVHTREKPYKCKVCSRSFAVKSTLTSHIKTHRKVKKIQCKYCPKYYSTWSSLNVHARKHTGVKPYKCTVCSKTFRSTSILKQHFQIHLTSVKDTLYSKDPQCEIIMQQPIYISNKGLQSVGVPLKKRPLIEAGAKNRPYTCLVCNAGFRKLSHLKQHHIRHTGERPFRCHLCFRSFSSSGVLKSHILTHSGAKPYSCVLCQKNFATNGSLRRHFESHSNVRPFLCPYCFKSFKTVLSCRKHMKIHKLELSLQLQASKDCGYTNSDLVQPKPNELPYPPDLTDTIDDEPFVLVNQNEEMVDDPAQQELVTQTLRADQTGTVVLPVIANQENLTQENMQEIEDTLNNQMMDIIGDDNYMNSTAYLKKIGPDEPIATTDELVNTLTENSAKSIDESAFLYQHVIVNLNPETEQMFDNVGIDNILSQVKLQNDSLFLTDLNSININETNSILSYQITQQTDLHQNQMLLQLEPESTQVEQTINIDQSINLEQSINLEQSINLEQSINLEQTINLEQSINLEPSLQIKLQAMEGFLTSNQSEPNILSESAQFLTQTEDLTQTKNLLLNEPEQAQTTIEEDIITDAMDVICNLCKLKFKNKSDLKVHRCLHFVDVDVNATNENGLSETFNMPTSEVVYDFGSSMDPIETVEILRNDVPVYRNQCTYCPKTFRKPSDLQRHLRTHTGERPFKCHECAKSFSLKSTLESHVRVHQERKSFTCNVCSSLFATKGSLNVHMRLHTGAKPYKCCLCHLRFRTSGHRKAHLAVHYKEASKTGKLPHEIITRKAKMSELMDGVQSLIEDLNPQEDDKDPDGELEEIEHPNQVKSYENIVLDTQDSQLMQFEVQTNEQGHILNIKPAASNILIVDDSVKNQLMPQVEFDDKTKKDIEFFISEKYMKQNIDSKKKKICDVCQKEFTSNYQLARHKKIHSNEREHACTHCARTFTQKSSLDTHLNTHFGTRPFPCPYCSNTFSQSGNLKTHVKRIHNLIIDKTVNRDADNEEANTNLLNNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01040287;
90% Identity
iTF_01041076; iTF_01040287;
80% Identity
-