Nsal002623.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nebria salina
Gene Symbol
-
Assembly
GCA_944039265.1
Location
CALUEJ010000015.1:1550015-1556102[+]

Transcription Factor Domain

TF Family
MBD
Domain
MBD domain
PFAM
PF01429
TF Group
Unclassified Structure
Description
The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.8e-15 2.3e-11 44.0 0.1 8 70 252 312 247 317 0.89

Sequence Information

Coding Sequence
ATGGAAACAAGCGAATCAGTGCAAAATCCTGAAAATGGTAAAGATAGCTCAGAAGATTTAGAGGAAACAGTTTCTATAAGTCCAGTTACGGAAATCAAACAAGAGGTCGATTCAGACCGTAATGATGACAACGACAATACAATGGAAATTGATGAAAGTTCTACCGTCGAGGAGGATACGAAATCGGTAGATAGTGAAATTGTTATTAAGAAAGAGAACACAGAAATAGAAACGAGCCCGCAAAGTAGAAAACGAAAACTGGACGATTTTGATGATGATGTGGAAGAGGAGGAGGAATTATGTGAAACTGAGAACTCATCACCCATTGATTTCCTTGGTTTCCCCGACGGCCATTCGGAAGAAGTGAAACGTCATGaagaaaaaaaggaaaaattCGAAAAACCTAGTGTGAAGTCTGATAACTTAGTTTTTGATACAGCATTAGGAAAAGGAAAACGGTCGCGTATTCCGAACAAAAAATATGAGACACCAACGATAAgatcattttcaaaaaaatctaCTGATAACATCGATTTTGAAGGTGGACCAGAAGTGACTAGTTCGGAAGATGGCCGAAACGAAGATGAAAGTGAGGTGCACAAAATGGACGATGCATCATCGGAAGTATCAAGTTCAGCGCACAGCAGTCCGTCAGTCGGTAACCGGGCGAAAAACTCCCGATTGGCGAGCAGCGTTGCGAGTCCGCATAACAAAAAACCGAAATTCACCGTCGATATGACAAATCCGAACTTTTTAAAGCCATTTGATCACGGCTGGCGCCGTGAATTAGTTTACCGTTCTAGTTGCGATAGTTACGGCCGCCGCAACGGTGACGTCTATTATTACATGCCGACAGGACAAAAAATTCGATCGATGCGCGAACTAATCGAAACCCTAGATGCCCCAGAATTAACACCCGAAgactttacattttttaaagaaCCCGTCGGTTTAAATGACTTATCAAAAGAAATCGTCCGCAATGCTAAAGTAAAAGGAACTTGGGGCGGTAcaccaattttaaaaaaagtcaCACCGAAAAGTAAAACCAGTCGAGAACGAACTGTACCATCGACTCCAGAAATAGGAAAATCACCGCGGTTAGGTGGCTTTAAGGTTAAAATTCCTGGATCGTCGCGATTGAGTCAAGGAGCTCAGAAAACCGATCGTAAACGTTCCGTGGATAGTGATATGGAGATGGGTATGCTGCCACCGGTTTGGTCGCCGAAGAAAGGTTCCGCGTCGAAGCAGTCTCCATGGCAGGCAAAAACTGGCAGCTTAACAAACGCATCGTTGGACTCGAAAAGATGCCATCCGTGCTCTATCCGGTGCCAGGGTGTATCGGGTCTAATACCGACATTACAGTGTCGTTTATGCCTCTGCTTGTACCATAAAGAGTGTGTTGGTGAAGCAAGCGATGATGTCCCGGCTGGCTACGTGTGTAAGAATTGCCAACTGGACTGTCAAGATAAATTAGATACTTCATTTATTCCTACGCCAGGTCCGCCCCCCTTAACTCCAATTAGTTCTCTAAAAtccaataatttattatcctCCATGCCACCAAAACTTCATAAAATACCGCGGCCTGGCGAAAAATTATACCTTCAAACTAAAACTCCACATTTATCCAAACAGACTTTACTTCCCAAAAAATCAGaatataaatcaaacaaatttgcACAATCAACAcgttattcaaataatatagaaTCGGGCAATAAAAGTTCGGTCAGATCTATGACCACATGGCTGGCGCCTAATTCTACCATTAAAATGAATGCTAATAATCATAGTGTAAGTGATGATTTAATCTCACCCAAACCTCAAGGGTTAGTTATAATGGGGGAAAGAAAATTTTTAGTTGTTCCCAAAGGAAATGTGTTGTCTATTTCACCTGCTGTTGGAGCAGCAGCTAATACTCCTAGTAGCAAACGTTTGGTGCCGCCAACTGCTGACAAAGCACCAATGTTTGAAACAATCTCTAAAGAAAAGAGTAAATTGTTGGATAGTGCAATTCCAAGTGCTCCAGTGTCTGCGTCTTTCGGTCCTATATCCTTATCAGCAAATGCATCTTCTCCTGCGATTATAGATAAACCAACTCATCCCGATTCCTCTGAAGCACTTCCAGGGCCGGTTGATTCCAAACGGGACGTGGCTGCCAAGACTTCATACGGTGAAACGCCTAAAGAAAATCAACGGGAGCCATCGCCGCCGAAAACCAGGAGAAGCGTTACTCGAAAAACAACACTAATCGCAGTTGCAACACCAAAGCTGGATGCGGAGACACGCTTCATGCAAAACTACTTGCAAAATTTGTCGTACGGTTATCAGACACTAATGTATGTGTTTCAATACCTAAAAGTTCAAGATTTATTACGTGCTGGTTGTGTGTGTACATTATGGCGTGACATCGCCGCACACCCAAGCTTGTGGAGGACTGTTCGCATGAAAAATTCACAAGTGTCTAACTGGGAAGGATTAGCAGACGCACTAAAAAAACACCGCACCGAAAACCTAGATCTCCGCAAAATGCTCTTGCCCAATTCGGGCGATGATATGTGGCCATTATTTTCAAAAGCGATCGTACGCGTTGATTCCCTAATTCGAATAGAATTGTGCCGTTGTCCAGCTTCTGTTATTGAAGAATTGGCGAAATCAAATAGTAACTTACAAGTTATTAACGCTGTAACAATCCGTTGCGAAACACTCGACGTAGCCTCAATGTCTAATGTCGCGAATTTACAAGAGTTAAGATTAAAGTCTACAAATGGATTCGCGTTAACTTCGGATTTATCACCATTGAAACAACTGACAAAGCTGAAACATTTGTCACTGACGTCCGTGAAGGAACTGAATAAACAGAACGTGGAAATCATtggcaatttaattaatttggaaTCGTTAGATTTGGGAGAATGTAGCGATTTTCCAGATCATTTTGGAACTGATGTTATCGGGAAATTgacaaaattagaaaaacttCGTTTGGAGAAAGGACAAGGTACGTGTTGTACCTTTGATATTTTGGACGCGGTTAGCAAAATTTCCTCTTTAGAACAATTGGAATTAGTTAACTTCGATGTCAAAGCTGGTTTTGACAAAGCACTTGGCGCATgcatgaatataaaaaaactacTGATCATCCCTACGTACATATCACAATCGGCAACTACAAATCACATGGTGCTGGGTGGTGTAATAAAACTGAAAGCGACTTTATCGCATTTCGTATGGGGGGTCACACTGGAGTTGCTACGAGTCACAGAATTGTTTGTAGATCAATGCGAAGATTCACCGAATAAAGACAAAAAGAAAACCGCAGGTAACGGAGATAGTATACCCGTACTAAAACCGGTACCAATTATGAAAGTTGAGGAGACGAATGAAGTATCAAGTAAAGAACCACCACAAGTAGAAATATTACCGTTGCCGACTCTACAAAAATTATTGCTCAATGCGTTGCCGACGACGCGggtgaaaatattaaaaatcccaTTCCACGCGACATGGCGGCAAAGCATCGTGGACACCGTTAATTAA
Protein Sequence
METSESVQNPENGKDSSEDLEETVSISPVTEIKQEVDSDRNDDNDNTMEIDESSTVEEDTKSVDSEIVIKKENTEIETSPQSRKRKLDDFDDDVEEEEELCETENSSPIDFLGFPDGHSEEVKRHEEKKEKFEKPSVKSDNLVFDTALGKGKRSRIPNKKYETPTIRSFSKKSTDNIDFEGGPEVTSSEDGRNEDESEVHKMDDASSEVSSSAHSSPSVGNRAKNSRLASSVASPHNKKPKFTVDMTNPNFLKPFDHGWRRELVYRSSCDSYGRRNGDVYYYMPTGQKIRSMRELIETLDAPELTPEDFTFFKEPVGLNDLSKEIVRNAKVKGTWGGTPILKKVTPKSKTSRERTVPSTPEIGKSPRLGGFKVKIPGSSRLSQGAQKTDRKRSVDSDMEMGMLPPVWSPKKGSASKQSPWQAKTGSLTNASLDSKRCHPCSIRCQGVSGLIPTLQCRLCLCLYHKECVGEASDDVPAGYVCKNCQLDCQDKLDTSFIPTPGPPPLTPISSLKSNNLLSSMPPKLHKIPRPGEKLYLQTKTPHLSKQTLLPKKSEYKSNKFAQSTRYSNNIESGNKSSVRSMTTWLAPNSTIKMNANNHSVSDDLISPKPQGLVIMGERKFLVVPKGNVLSISPAVGAAANTPSSKRLVPPTADKAPMFETISKEKSKLLDSAIPSAPVSASFGPISLSANASSPAIIDKPTHPDSSEALPGPVDSKRDVAAKTSYGETPKENQREPSPPKTRRSVTRKTTLIAVATPKLDAETRFMQNYLQNLSYGYQTLMYVFQYLKVQDLLRAGCVCTLWRDIAAHPSLWRTVRMKNSQVSNWEGLADALKKHRTENLDLRKMLLPNSGDDMWPLFSKAIVRVDSLIRIELCRCPASVIEELAKSNSNLQVINAVTIRCETLDVASMSNVANLQELRLKSTNGFALTSDLSPLKQLTKLKHLSLTSVKELNKQNVEIIGNLINLESLDLGECSDFPDHFGTDVIGKLTKLEKLRLEKGQGTCCTFDILDAVSKISSLEQLELVNFDVKAGFDKALGACMNIKKLLIIPTYISQSATTNHMVLGGVIKLKATLSHFVWGVTLELLRVTELFVDQCEDSPNKDKKKTAGNGDSIPVLKPVPIMKVEETNEVSSKEPPQVEILPLPTLQKLLLNALPTTRVKILKIPFHATWRQSIVDTVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01040125;
90% Identity
iTF_01040125;
80% Identity
-