Basic Information

Insect: Nebria brevicollis
Gene Symbol: L
Assembly: GCA_944739395.1
Location: CALYJC010000105.1:536263-546562[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 2.5e-05 0.0024 19.1 1.1 1 23 86 108 86 108 0.98

2 21 0.32 30 6.2 5.9 1 23 114 136 114 136 0.98

3 21 1.7e-06 0.00016 22.8 4.1 1 23 142 164 142 164 0.99

4 21 2.7e-05 0.0026 19.0 0.2 1 23 170 192 170 192 0.98

5 21 0.0024 0.22 12.9 0.2 2 23 227 249 226 249 0.95

6 21 0.091 8.5 8.0 2.6 1 23 348 371 348 371 0.96

7 21 1.9 1.8e+02 3.8 0.0 2 23 389 411 388 411 0.94

8 21 0.069 6.4 8.3 0.1 2 23 474 495 473 495 0.96

9 21 0.31 28 6.3 2.8 2 23 529 550 528 550 0.91

10 21 0.0029 0.27 12.7 0.3 1 23 558 581 558 581 0.94

11 21 0.021 1.9 10.0 0.3 1 23 586 609 586 609 0.92

12 21 0.0028 0.27 12.7 0.4 1 23 684 707 684 707 0.98

13 21 3.5 3.3e+02 3.0 0.6 3 23 769 791 767 792 0.86

14 21 0.0055 0.51 11.8 4.6 2 23 805 826 804 826 0.96

15 21 0.021 2 10.0 0.7 1 23 836 858 836 858 0.98

16 21 0.00069 0.064 14.6 0.6 1 23 975 998 975 998 0.95

17 21 0.19 17 7.0 0.6 1 23 1002 1024 1002 1024 0.96

18 21 0.0071 0.66 11.4 1.5 1 23 1032 1054 1032 1054 0.96

19 21 0.0046 0.43 12.0 0.6 1 23 1062 1084 1062 1084 0.97

20 21 0.044 4.1 8.9 1.0 1 23 1091 1113 1091 1113 0.96

21 21 0.0031 0.29 12.6 0.9 1 21 1164 1184 1164 1185 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	2.5e-05	0.0024	19.1	1.1	1	23	86	108	86	108	0.98
2	21	0.32	30	6.2	5.9	1	23	114	136	114	136	0.98
3	21	1.7e-06	0.00016	22.8	4.1	1	23	142	164	142	164	0.99
4	21	2.7e-05	0.0026	19.0	0.2	1	23	170	192	170	192	0.98
5	21	0.0024	0.22	12.9	0.2	2	23	227	249	226	249	0.95
6	21	0.091	8.5	8.0	2.6	1	23	348	371	348	371	0.96
7	21	1.9	1.8e+02	3.8	0.0	2	23	389	411	388	411	0.94
8	21	0.069	6.4	8.3	0.1	2	23	474	495	473	495	0.96
9	21	0.31	28	6.3	2.8	2	23	529	550	528	550	0.91
10	21	0.0029	0.27	12.7	0.3	1	23	558	581	558	581	0.94
11	21	0.021	1.9	10.0	0.3	1	23	586	609	586	609	0.92
12	21	0.0028	0.27	12.7	0.4	1	23	684	707	684	707	0.98
13	21	3.5	3.3e+02	3.0	0.6	3	23	769	791	767	792	0.86
14	21	0.0055	0.51	11.8	4.6	2	23	805	826	804	826	0.96
15	21	0.021	2	10.0	0.7	1	23	836	858	836	858	0.98
16	21	0.00069	0.064	14.6	0.6	1	23	975	998	975	998	0.95
17	21	0.19	17	7.0	0.6	1	23	1002	1024	1002	1024	0.96
18	21	0.0071	0.66	11.4	1.5	1	23	1032	1054	1032	1054	0.96
19	21	0.0046	0.43	12.0	0.6	1	23	1062	1084	1062	1084	0.97
20	21	0.044	4.1	8.9	1.0	1	23	1091	1113	1091	1113	0.96
21	21	0.0031	0.29	12.6	0.9	1	21	1164	1184	1164	1185	0.94

Sequence Information

Coding Sequence: ATGTTGTTTAAGGGAAACAGTAGCAAACTTGAACTGTTAATTGAAAAAATACAATCCAACAAGGAGAATCACCTTAACACAGGCAACGGTCTAAAAGaagcACTGGGTACTGACCAAGGAAGCAGTTGGCGTTCGGAAACGCCAGAAGATCCTCAGACATCGCCGGCACCATCCTCCTGCGCCACGCCGAACTCAGCAACGGACCTGCCGGACGCAGAGCTTAGCTACACCGTGGGAATCACGGAAGCAACACCCTACGCCTGTCAGTTTTGCGATAAGGCATTCCCTCGACTAAGCTTCCTTAAGAAGCATGAACAGACGCATGGCGATCATATGCCGTTTCGGTGTGAATTCTGTTCAAGATTATTCAAACATAAACGCTCACGTGACAGACATATTAAACTACATACAGGAGAcaaaaaatatagatgttcCCATTGCGAGGCTGCATTTTCCCGAAGCGATCACTTGAAAATACATATGAAGACTCATGATACTCAAAAACCATTTCAATGTACAGTGTGTAACAGAGGCTATAATACTGCCGCAGCATTAACATCTCATATGCAAAATCATAAACGACAAAGACCTGAAACACCGTCAACAGGTAGACCAAGCAGCAGTGGTAGAAATACTGGTCAAGTCAGCGAAGAAAGCATTTCTAGTCCTAGTAGTTTACGATGTGTGCAATGTGGGGACACATTTAGAAAACAAGAGCTATTGCAGAGCCACATATTAAGTGTGCATAGTAGCGATGTTTCGCCTGATGTAACGATACGAACGACACCGTTACCTTTAGTCATCACAGATCCTAGAACAACACCACTTGGCACAAAATTAGCGTGTATATATTGTACAAAAGATAGTTTCACAACTATGGAACAACTACAACTGCACGTACAAGCAATGCATAGTTCGATTTTGAATGGGGAACTTCGTGAATATACCCGAAAAATGGCAACACCTTCTCCTCAAAACCTAATGACTCCACCACCAGCATTATCATCTGGCAATGGGCACACATCGAATTTTGGTGTTTCCTATCCATGCGATATGTGCACCATGCACTTTCCAACACTACAAAGATTACACAAGCATACGGTAACCGTCCATAGAAATTGCGATTCGAGTCAGACGGAATCGGTGTGTCAACAAAGTCCACTGGTATGTGTTCAGTGTGCTCTTCCATTTCAAACGTCCACAGCATTTGCTGAACATTACCTTATGGTGCATGGTGGCAGCAGTCCATCATTCGCCATGTCCCCAATTCCGGAACAAGTTAAACCGACAGATTTGAGCAGAAAAACACCCAGATCAGCATCAGAAGACAGAAAAGCGAAACGCTTATGTACAGATGACAATTCAACATGTACAGATACAACAACCACAGCTACCCATTATGAGTACCCGGGAATGTTGATATGTAACCAGTGTGATGCAGCCTTACcagattttgaatcattcCGTACACATTTAAAATCGCATTTGGAACAAACGGGCGGCATTCGCAATTTATTACAAACCGGAACCAGTGTGCTAGATTTGTTCTATCAAGAAAACATGAAACTACAATCCAATTCCTGTGTTTGTCCACACTGCGGAGCTAATTTTAAAGATTTAGCCTCTTGTGACCAACACGTTATTACGCATTTCTTAGCAACTGCAACCGAGTATAGTTGCCAAAGTTGCATGAAAATGTTTGCGAAACCCGATGAATTACAAAAACACTTAATGGACATTCACGCTCACCATTTATACCGTTGCTCGATGTGTAAAGAAATGTTTGATTCGAAAGTAGCAATACAAGTACATTTCGCAGTGAAGCACAGTAACGAATGCAAACTGTTTAGATGTACAGCCTGCCCAAATGTTTCCTCGATATTTCACTCGGAAATTGAATTCAGTTTACACGTTCGTAGTGCGCATGGCGCGCATGCGCTCTTCTCAGCACTTCAGTCCCATACGAAGAGCTTACGTTGTATGTTTTGCCGCCAAACATTTGGCTCTGATTTGGAAATGCAGTTTCATCTAGCCACTCACTCCAAACAATTCCGATGTCCAATTTGCCCTGAGGCGTTTCAAATTGAGTTTTTATTGGATCGACACATACAAACTTGTCATAGCAATGCATCAAGGataaatgGTGAAACTGATTGCATTGATGGAGACAAGTCCAATAAAAAATCCTCGTCAAATTCACCGTTACAATTGGGGAAAATACTCACACCACCCAGAACTTCTGCAAAACCGTTAACGAGAGACAATAATAACGTGAAGAAACAGCATGATGTGTCTGAGACAAATTGTGAAATATGTGAACGCAATGATTTTACAAACGAAACCGAGTTAGTTGCACATCGAAAACTCGTGCATCATGTGCGTAATAATAGTAAAAATGGAGTGGTTAGCTTACATTGTGCTTATTGTAACGAAAACTGTAAGACTAGAACCGAGCTAGAAAACCATATGAAGAACCATTCGCAAAGTAGTGGTGTGTCTGGTAAgcataaatgtaatatttgtgATGAGTTGTGTCCTTCAGCTGTATTACTTGCTGAGCATAAATTAACACATTGTAAGGTAAGAACTGGGAACTGTTGCACGCAATGCAAAGGCAGTATTGCTAATGAAGAGCAATTCTATTCACACCTTGTGCAGCATAGTAACAATAATAATGGTGGTAACCAAAAGAGTAAATCACAAGTTTCTTTGCCTGCGCCATGTATTATATGTCGCCAGACTCTTATATCAGATATTGAAGCCAGAATTCATTCGCAATTTCATTTAAGAACCACGGTGCAGCTTGCTGATTTCCAATGTTCTATTTGCTtcaaaatcatagatattCAAAGTTTGATTATGTCAAAAGGCATTCATTTGTGTCCGGATTGTTTCACATTACCAACCGGTACACAACGAACATTCCACTGTGCTGAATGTCAACTTACGTTCGAAAATAGCTCGGCCCTCGAACAGCATACTGAATCAGTACACACGAAAACGTTCACATGCATAAAATGCCAAACTAGTTTTGATAGTGAACGTGACGTTCAAATACACGTCACTACTCATTTAATGAATGAAGGCAATAGTCACGAATGCCATTTATGCAGACGACTATTCGCCACACCGATGAAACTACAAGCACATTTGATTGAACACACATTTGCTGGATGTGGTGGTTTCACATGCTACTTATGTTCTGCCGTATTCACTGGCTCACACGGCTTACAAAGCCATATCCTCGAACATGGTCTCGCTGCAAGACCATACGATTGTCCACAGTGCAACTTAAAGTTCTTCTTTCGCGCAGAATTAGACAATCATAGTTACACTCACTTGGGTCGTGGTTCAAGGTCATCTACTGATGAACTACCTGTCCTTAGTCCAAAAGCGTACTATGTATCTTCCATTTCGAAGTTTGACTCAAGCAAAAATGGTGATAAATACTCAATGAAGGAGAAGAAAGAGAAGAAGTCGTCCAATCTATTTAAATGTACTGTGTGCAATAAAGAATTCACTTACGGCACTGAGTTGCAGTTACATGTGCAGCATTGTACTGATACGCAAGCGTACTCGAAAGATGAAACAGTTGTTAAACAAGAACCAAAAGAAGATGTGAGTGATTGCAAAAAGGAGTTCAATATGGATGTGAGTTCACTTGCTGCGTCACCGAAATTCAAGTGTGAGGATTCGAATTCTTTCGAACATTTTGAGAAAATCGAAtctcaaaaataa
Protein Sequence: MLFKGNSSKLELLIEKIQSNKENHLNTGNGLKEALGTDQGSSWRSETPEDPQTSPAPSSCATPNSATDLPDAELSYTVGITEATPYACQFCDKAFPRLSFLKKHEQTHGDHMPFRCEFCSRLFKHKRSRDRHIKLHTGDKKYRCSHCEAAFSRSDHLKIHMKTHDTQKPFQCTVCNRGYNTAAALTSHMQNHKRQRPETPSTGRPSSSGRNTGQVSEESISSPSSLRCVQCGDTFRKQELLQSHILSVHSSDVSPDVTIRTTPLPLVITDPRTTPLGTKLACIYCTKDSFTTMEQLQLHVQAMHSSILNGELREYTRKMATPSPQNLMTPPPALSSGNGHTSNFGVSYPCDMCTMHFPTLQRLHKHTVTVHRNCDSSQTESVCQQSPLVCVQCALPFQTSTAFAEHYLMVHGGSSPSFAMSPIPEQVKPTDLSRKTPRSASEDRKAKRLCTDDNSTCTDTTTTATHYEYPGMLICNQCDAALPDFESFRTHLKSHLEQTGGIRNLLQTGTSVLDLFYQENMKLQSNSCVCPHCGANFKDLASCDQHVITHFLATATEYSCQSCMKMFAKPDELQKHLMDIHAHHLYRCSMCKEMFDSKVAIQVHFAVKHSNECKLFRCTACPNVSSIFHSEIEFSLHVRSAHGAHALFSALQSHTKSLRCMFCRQTFGSDLEMQFHLATHSKQFRCPICPEAFQIEFLLDRHIQTCHSNASRINGETDCIDGDKSNKKSSSNSPLQLGKILTPPRTSAKPLTRDNNNVKKQHDVSETNCEICERNDFTNETELVAHRKLVHHVRNNSKNGVVSLHCAYCNENCKTRTELENHMKNHSQSSGVSGKHKCNICDELCPSAVLLAEHKLTHCKVRTGNCCTQCKGSIANEEQFYSHLVQHSNNNNGGNQKSKSQVSLPAPCIICRQTLISDIEARIHSQFHLRTTVQLADFQCSICFKIIDIQSLIMSKGIHLCPDCFTLPTGTQRTFHCAECQLTFENSSALEQHTESVHTKTFTCIKCQTSFDSERDVQIHVTTHLMNEGNSHECHLCRRLFATPMKLQAHLIEHTFAGCGGFTCYLCSAVFTGSHGLQSHILEHGLAARPYDCPQCNLKFFFRAELDNHSYTHLGRGSRSSTDELPVLSPKAYYVSSISKFDSSKNGDKYSMKEKKEKKSSNLFKCTVCNKEFTYGTELQLHVQHCTDTQAYSKDETVVKQEPKEDVSDCKKEFNMDVSSLAASPKFKCEDSNSFEHFEKIESQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01040323; iTF_01041188;
90% Identity: iTF_01041188;
80% Identity: -