Ngir009874.1
Basic Information
- Insect
- Nasonia giraulti
- Gene Symbol
- -
- Assembly
- GCA_000004775.1
- Location
- GL277768.1:8617049-8618661[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.6e-10 7.4e-07 28.5 0.1 3 35 17 49 15 55 0.91 2 2 0.43 4.8e+02 0.3 0.0 21 30 110 119 109 120 0.89
Sequence Information
- Coding Sequence
- ATGGTtcgtaaatataaaagaaaaggtcAGAGACAACTGTGGAGTAAAGATTCCATGAGAACGGCTATAGAAGCTGTTATTAGTAATAATATGAGTGTCAGGAGAGCCTCCATAGAACACAAGATACCTCAGGCAACGCTGTCCAGGAAAATTCACCAAATTCGGTCTGGACCCCCGAAAGACATAGAGCTAATTGTTAAGCCTTGGGgatcgaattttcaaacagtATTTAACAAAGAGCAGGAGTCAGTTTTGTGCGAGTTTATTCATACATTAGAGAATCAATTCATACCATTTAATAGTATGGATGTCAGGAAATTAGCTTACCAATtggctgaaaaattcaatgttcCTCACCCTTTTAATAAAGACTTTGCTGTGGCAGGAGATGATTGGTACAAAGGATTTTTAAAGAGGAATCCAGagatttgcataaaaaaactcgatataaatgaaaaaaccAAAGACATGAAGAAAGCCcaagtttacaaattttttgacTTATTGGAAGGTTTAACCGATAAGCATCAGTTGGAAGCTTGTGATATTTACAATCTTGATGAAACTGTTATAACTTGCTCGTTAAACACTAATGAAGATGAAGCTAAAAATACAGAAGAATCAAGTGGTCAGAACAAATTAGTTACAGCAACAGTATGTTTTTCAGCTAGTGGAGCATATGCACCACTTATGTTAATTTTTCCATGCTCGACCTACAAGAATTCCATTCTTAAAGGTGCACCACCTGGAGCATGGGCTGAATACGATCAAAGTGGACAAATGCAGTTAGATATTTTTGTCACTTGGTTGAAGAAGTTCATAAAGTTTTCCAAAGCATCTAAGGACTCTCCAGTTCTTCTTATTGTGGATGCATATCatagctttttaaaaaaattacatgtaCTTGAATTAGCCAAGGAAAATGGAGTAAACATATTGTGTTTGCCTCCGTATTGCACTGAAAAGTTTCAGCCTATGCAGCAAGAATTCATGAATTCATTAAGTACTGCTTATACAAGTGAAATTGCAAAATGGACACGCTCTAATCCTGGACGTTCGGTTTCCATAGAAGAAGTTTATCAACTATTTGGAAATgcgtttatgaaaatttcaacaatgGCATTGCCCGTGCATGGTTTTCATAGTACAGGGATTTGGCCTATAGACAGAGATCAAATTCAGAATGTGTTTGTtcaattttctgaaaaaggTTCGATTGAGANAAactag
- Protein Sequence
- MVRKYKRKGQRQLWSKDSMRTAIEAVISNNMSVRRASIEHKIPQATLSRKIHQIRSGPPKDIELIVKPWGSNFQTVFNKEQESVLCEFIHTLENQFIPFNSMDVRKLAYQLAEKFNVPHPFNKDFAVAGDDWYKGFLKRNPEICIKKLDINEKTKDMKKAQVYKFFDLLEGLTDKHQLEACDIYNLDETVITCSLNTNEDEAKNTEESSGQNKLVTATVCFSASGAYAPLMLIFPCSTYKNSILKGAPPGAWAEYDQSGQMQLDIFVTWLKKFIKFSKASKDSPVLLIVDAYHSFLKKLHVLELAKENGVNILCLPPYCTEKFQPMQQEFMNSLSTAYTSEIAKWTRSNPGRSVSIEEVYQLFGNAFMKISTMALPVHGFHSTGIWPIDRDQIQNVFVQFSEKGSIEXN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01486971; iTF_01036124;
- 90% Identity
- iTF_01486971; iTF_01036124;
- 80% Identity
- -