Tsar013974.1
Basic Information
- Insect
- Trichomalopsis sarcophagae
- Gene Symbol
- -
- Assembly
- GCA_002249905.1
- Location
- NNAY01002052.1:13526-16394[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.9e-10 8.4e-07 28.4 0.1 3 35 17 49 15 55 0.91 2 2 0.31 5.3e+02 0.2 0.0 21 30 110 119 109 120 0.89
Sequence Information
- Coding Sequence
- ATGGTtcgtaaatataaaagaaaaggtcAGAGACAACTGTGGAGTAAAGATTCCATGAGAACGGCTATAGAAGCTGTTATTAGTAATAATATGAGTGTCAGGAGAGCCTCCATAGAACACAAGATACCTCAGGCAACGTTGTCCAGGAAAATTCACCAAATTCGGTCTGGATCCCCGAAAGACATAGAGCTCATTGTTAAGCCTTGGGgatcGAATTTTCAAACAGTATTTAACAAAGAGCAGGAGGCAGTTTTGTGCGAGTTTATTCATACATTAGAGAATCAATTCATACCATTTAATAGTATGGATGTCAGAAAATTAGCTTACCAATtggctgaaaaattcaatgttcCTCACCCTTTTAATAAAGACTTTGCTGTGGCAGGAGATGATTGGTACAAAGGATTTTTAAAGAGGAATCCAGagatttgcataaaaaaactcgatataaatgaaaaaaccAAAGACATGAAGAAAGCCcaagtttacaaattttttaacttattgGAAGGTTTAACCGATAAGCATCAGTTGGAAGCTTGTGATATTTACAATCTTGATGAAACTGTTATAACTTGCTCGTTAAACACTAATGAAGATGAAGCTAAAAATACAGAAGAATCAAGTGGTCAGAACAAATTAGTTACAGCAACAGTATGTTTTTCAGCTAGTGGAGCATATGCACCACTTATGTTAATTTTTCCATGCTCGACCTACAAAAATTCCATTCTTAAAGGTGCACCACCTGGAGCATGGGCTGAATACGATCCAAGTGGACAAATGCAGTTAGATATTTTTGTCACTTGGTTGAAGAAGTTTATAAAGTTTTCCAAAGCATCTAAGGACTCTCCAGTTCTTCTTATTGTGGATGCATATCAtacctttttaaaaaaattacatgtaCTTGAATTAGCCAAGGAAAATGGAGTAAACATATTATGTTTGCCTCCGTATTGCACTGAAAAGTTTCAACCTATGCAGCAAGAATTCATGAATTCATTAAGTACTGCTTATACAAGTGAAGTTGCAAAATGGACACGCTCTAATCCTGGACGTTCGGTTTCCACAGAAGAAGTTTATCAGCTATTTGGAAATgcgtttatgaaaatttcaacaatgGCATTGCCCGTGCATGGTTTTCATAGTACAGGGATTTGGCCTATAGACAGAGATCAACTTGAGAATGTGTTTGTTGAATTTACTGAAAAAGGTTCggttgaatattttcaaaaaaactacaatattttattgattaacACTTGTAGAATTGTGATGCAGAGAAAGTGA
- Protein Sequence
- MVRKYKRKGQRQLWSKDSMRTAIEAVISNNMSVRRASIEHKIPQATLSRKIHQIRSGSPKDIELIVKPWGSNFQTVFNKEQEAVLCEFIHTLENQFIPFNSMDVRKLAYQLAEKFNVPHPFNKDFAVAGDDWYKGFLKRNPEICIKKLDINEKTKDMKKAQVYKFFNLLEGLTDKHQLEACDIYNLDETVITCSLNTNEDEAKNTEESSGQNKLVTATVCFSASGAYAPLMLIFPCSTYKNSILKGAPPGAWAEYDPSGQMQLDIFVTWLKKFIKFSKASKDSPVLLIVDAYHTFLKKLHVLELAKENGVNILCLPPYCTEKFQPMQQEFMNSLSTAYTSEVAKWTRSNPGRSVSTEEVYQLFGNAFMKISTMALPVHGFHSTGIWPIDRDQLENVFVEFTEKGSVEYFQKNYNILLINTCRIVMQRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01035346;
- 90% Identity
- iTF_01035346;
- 80% Identity
- -