Nlon001227.1
Basic Information
- Insect
- Nasonia longicornis
- Gene Symbol
- -
- Assembly
- GCA_000004795.1
- Location
- GL277950.1:8616655-8618627[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-09 9.4e-07 28.3 0.1 3 35 17 49 15 55 0.91 2 2 0.64 5.9e+02 0.1 0.0 21 30 110 119 109 120 0.89
Sequence Information
- Coding Sequence
- ATGGttcgtaaatataaaagaaaaggtcAGAGACAACTGTGGAGTAAAGATTCCATGAGAACGGCTATAGAAGCTGTTATTAGTAATAATATGAGTGTCAGGAGAGCCTCCATAGAACACAAGATACCTCAGGCAACGCTGTCCAGGAAAATTCACCAAATTCGGTCTGGACCCCCGAAAGACATAGAGCTGATTGTTAAGCCTTGGGgatcgaattttcaaacagTATTTAACAAAGAGCAGGAGGCAGTTTTGTGCGAGTTTATTCATACATTAGAGAATCAATTCATACCATTTAATAGTATGGATGTCAGGAAATTAGCTTACCAAttggctgaaaaattcaatgttcCTCACCCTTTTAATAAAGACTTTGCTGTGGCAGGAGATGATTGGTACAAAGGATTTTTAAAGAGGAATCCAGagatttgcataaaaaaactcgatataaatgaaaaaaccAAAGACATGAAGAAAGCCcaagtttacaaattttttgacTTATTGGAAGTTTTAACCGATAAGCATCAGTTGGAAGCTTGTGATATTTACAATCTTGATGAAACTGTTATAACTTGCTCGTTAAACAGTAATGAAGATGAAGCTAAAAATACAGAAGAATCAAGTGGTCAGAACAAATTAGTTACAGCAACAGTATGTTTTTCAGCTAGTGGAGCATATGCACCACTTATGTTAATTTTTCCATGCTCGACCTACAAGAATTCCATTCTTAAAGGTGCACCACCTGGAGCATGGGCTGAATACGATCAAAGTGGACAAATGCAGTTAGATATTTTTGTCACTTGGTTGAAGAAGTTTATAAAGTTTTCCAAAGCATCTAAGGACTCTCCAGTTCTTCTTATTGTGGATGCATATCAtagctatttaaaaaaattacatgtaCTTGAATTAGCCAAGGAAAATGGAGTAAACATATTGTGTTTGCCTCCGTATTGCACTGAAAAGTTTCAGCCTATGCAGCAAGAATTCATGAATTCATTAAGTACTGCTTATACAAGTGAAATTGCAAAATGGACACGCTCTAATCCTGGACGTTCGGTTTCCATAGAAGAAGTTTATCAACTATTTGGAAATgcgtttatgaaaatttcaacaatgGCATTGCCCGTGCATGGTTTTCATAGTACAGGGATTTGGCCTATAGACAGAGATAAAATTCAGAATGTGTTTGTtcaattttctgaaaaagTAATACAGGAAACTGAAGAATCTCAAATAGATGACGAACTAAGTTCAGTAATCATTCCTCCAGAGGCACAGTTATGTGAAGTACAATTCGAAGACTTACAGAATTTAATTCAGAGTCGAAAAAGACTTCATTATTATGTTTCTCCTTACAGATTTAATCTAtcgcgataa
- Protein Sequence
- MVRKYKRKGQRQLWSKDSMRTAIEAVISNNMSVRRASIEHKIPQATLSRKIHQIRSGPPKDIELIVKPWGSNFQTVFNKEQEAVLCEFIHTLENQFIPFNSMDVRKLAYQLAEKFNVPHPFNKDFAVAGDDWYKGFLKRNPEICIKKLDINEKTKDMKKAQVYKFFDLLEVLTDKHQLEACDIYNLDETVITCSLNSNEDEAKNTEESSGQNKLVTATVCFSASGAYAPLMLIFPCSTYKNSILKGAPPGAWAEYDQSGQMQLDIFVTWLKKFIKFSKASKDSPVLLIVDAYHSYLKKLHVLELAKENGVNILCLPPYCTEKFQPMQQEFMNSLSTAYTSEIAKWTRSNPGRSVSIEEVYQLFGNAFMKISTMALPVHGFHSTGIWPIDRDKIQNVFVQFSEKVIQETEESQIDDELSSVIIPPEAQLCEVQFEDLQNLIQSRKRLHYYVSPYRFNLSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01035346;
- 90% Identity
- iTF_01035346;
- 80% Identity
- -