Basic Information

Gene Symbol
nfxl1_1
Assembly
GCA_959347405.1
Location
OY365786.1:9129473-9131947[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 1 4.8e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 17 0.0052 2.5e+02 3.2 0.3 4 10 169 175 168 176 0.97
3 17 1.6e-07 0.0075 17.6 15.9 3 19 186 202 185 202 0.95
4 17 3e-05 1.5 10.3 13.8 3 18 239 254 237 255 0.91
5 17 4.2e-07 0.02 16.3 13.7 1 19 290 308 290 308 0.99
6 17 2.4e-06 0.11 13.9 16.5 3 19 345 361 344 361 0.93
7 17 3.3e-05 1.6 10.2 20.3 1 18 395 412 395 413 0.97
8 17 4.9e-10 2.4e-05 25.6 13.9 1 19 422 440 422 440 0.99
9 17 0.0001 4.9 8.6 6.4 9 19 488 498 486 498 0.89
10 17 0.027 1.3e+03 0.9 6.5 4 12 510 518 508 518 0.90
11 17 0.22 1.1e+04 -2.0 3.2 15 18 548 551 547 552 0.84
12 17 0.29 1.4e+04 -2.4 0.1 8 12 568 572 567 572 0.74
13 17 8e-07 0.038 15.4 4.4 1 11 588 598 588 599 0.99
14 17 0.81 3.9e+04 -3.8 0.5 15 18 613 616 612 617 0.79
15 17 0.00089 43 5.6 16.8 3 18 629 645 628 646 0.81
16 17 1 4.8e+04 -6.5 3.4 9 13 652 656 652 656 0.71
17 17 1.9e-06 0.092 14.2 11.3 1 16 687 701 687 707 0.91

Sequence Information

Coding Sequence
ATGGCACGAAGATACCGTGACGCTGCTGCTAAGTTGCAGCAAAGTGTGCAGAAACACTTGCAAGGCATGAAAGAGTTATCTTCGTCTGAAGATGACGAGCCTTTTGAACCAAGTGTATTAGATGGAATGTTCCAAAGCTATTGGAAAGGAGGTGGAGACACACAGCTTCTTAACAGAACGAAGAATCTTCTAGAAGAAGCGATAAGTGGTCGATCAATTACTTGCTTAATTTGTATAGGCTCCATCAAACGTGCCGATGCTATTTGGACATGTGAGCATTGTTACTCTTATTTCCATTTGTCTTGCATCCAAAAATGGTCAAATGATAGTATCAGTTTACGTAATGAAGAAAATCAAGGCTCTATTACTGTATGGATGCCTAAAAAAGAAGAATGGTGCTGTCCAAAATGTAGGCACTCATATACTAAAGAACAAATTCCTCATAAGTATCGTTGTTATTGTGGCAAGGCAGATGATCCTCCATTACACCCATGGCTCATACCACATACATGCGGTGAAGTATGTGGGAAACTATTATCTGCTGGAAACAATTGCAAACACAAGTGTCTCCTCCTTTGTCACCCTGGCCCTTGCCCACCATGCCCACAAACAGTAAATGGTGAATGCTATTGTGGTAAGGAAGGTAGACGCGTTAGATGCAGTGCTGCTAAATGGTCTTGTagacaaaaatgtaaaaaaacattaccTTGCAAATCACATAAATGTGAAAATGAATGTCATGAGAAGGATTGCCCTCCTTGCAATTATACAAGCTTGCAAAATTGTCTATGTGCAGCAGAAAAGACAAAACGTCCGTGCAATGATTTGGTTTGGAGATGCAAAAAACAATGTGCTAAACCATTTACTTGTGGGTACCATATATGTGAGAAAACATGTCATGCAGGTGGTTGTGGGGAATGCCCCAACTCTGGAGTAAAGACATGTCCATGTGGAGCcaataagaaatttatacaatgtcCAGATACCATTGAAACTTGTCTTGGAACATGTAATAAGCTACATAATGATTGTGAACACAACTGTCCAGATAAATGTCATAAAGGATCTTGTCCACCATGCCAGGTCTTAATTGAAAAAAGATGCCAATGTTCCACTCATACAAGATCCCTGCCTTGTAGTAAAGAATATAGATGTGACATGAAATGCAGAGGGATAAGGCCCTGTGGCAAACATGGTTGTGGTCGTAAATGCTGCAATGGCAACTGTCCTCCTTGTGAGAAGGTATGTGATAAACCTCTACAATGTGGGCGTCATAAGTGTTCAACAATTTGTCATCGTGGCCCCTGTTATCCATGCCCACTTGAGTCTAAAGTTACTTGTCGCTGCAAAGAAACATATGTTACAGTACCATGTGGTAGAGAGAGACATACAAAGCCACCAAAATGTAACATGCCttgcaaaattaaatataaatgcggACATATAGATGAAAATAAACATAGTTGCCATTTTGGTGATTGCCCACCCTGTAAGGCAACTTGTTATAAAACATATGAAAAGTGCGATCATAGATGTGTTTCAACATGTCATGAATATGTGTTGGTTGTGTTTAAGCAAATTGAAAAACCAGCAACTCCTTGGGAAGTACAGCCTCCAAAGACGAAAGTAGTTGCTCTCAAATGTCCTCCCTGTGAAACACCAGTTATGATCACATGCTTTGGTGAACATGAAACTCAGAATGATCCTTGCCATACTGCTGTAAGACGACCTTGCGGAAGAGAATGTGGCCGCGTCCTAGAATGTGGTAATCATAAATGTGAACTTCCTTGTCATTTCTATGAACCTAATTCAGATTATCCAAATGTGCCTTACTCTTGCAAATCATGTAACAGGGAGTGTTCAGTGATCCGTCCTCTGAAATGTACACACAAATGTCCCAAACAAGGTTGCCACAAAGGACCTTGCCCATCATGTAATGTGCTAGAAAGAATACCATGTCATTGTGGTGTAACTGATATTTATTTGCGATGTCGTGAAATAAACACTGCAACAGAAGAAATGTTAAGTTGTAAGCAGCAATGTCCAAAAAGTTTAGAGTGTGGTCATAGATGTAAAAACATTTGCCATTCAGGAACCTGTGGTCAAAATCAAATCTGCACCAAGAAGACCAAGATTCATTGTTCATGTGGAAACTTAAAGAAAGAAGCAGCATGTAATGCAGTGAGGAATTCTGAACAGAAAATTATTTGTGACAAAAGTTGTGAAGCCAAAAAAGTTGCTGCCCGGTTAGAGAAAGAAAAGGAGACCAAAAGACTTAAGGAATTAGAAGAAGAGAAGAATCGTAGAGAATTAGAGGAATATGAATGGAAATTAAGTGGCAAAAAGAAGaaatataaggaaaaaaaaGTGATGATAGTTACCGATAACAGAAATTGGATTAAAAAATACTGGGTTCCTATTATGCTTGGGTTAATTGCTATTGGGtctgctatttattatgtatttgatgtttga
Protein Sequence
MARRYRDAAAKLQQSVQKHLQGMKELSSSEDDEPFEPSVLDGMFQSYWKGGGDTQLLNRTKNLLEEAISGRSITCLICIGSIKRADAIWTCEHCYSYFHLSCIQKWSNDSISLRNEENQGSITVWMPKKEEWCCPKCRHSYTKEQIPHKYRCYCGKADDPPLHPWLIPHTCGEVCGKLLSAGNNCKHKCLLLCHPGPCPPCPQTVNGECYCGKEGRRVRCSAAKWSCRQKCKKTLPCKSHKCENECHEKDCPPCNYTSLQNCLCAAEKTKRPCNDLVWRCKKQCAKPFTCGYHICEKTCHAGGCGECPNSGVKTCPCGANKKFIQCPDTIETCLGTCNKLHNDCEHNCPDKCHKGSCPPCQVLIEKRCQCSTHTRSLPCSKEYRCDMKCRGIRPCGKHGCGRKCCNGNCPPCEKVCDKPLQCGRHKCSTICHRGPCYPCPLESKVTCRCKETYVTVPCGRERHTKPPKCNMPCKIKYKCGHIDENKHSCHFGDCPPCKATCYKTYEKCDHRCVSTCHEYVLVVFKQIEKPATPWEVQPPKTKVVALKCPPCETPVMITCFGEHETQNDPCHTAVRRPCGRECGRVLECGNHKCELPCHFYEPNSDYPNVPYSCKSCNRECSVIRPLKCTHKCPKQGCHKGPCPSCNVLERIPCHCGVTDIYLRCREINTATEEMLSCKQQCPKSLECGHRCKNICHSGTCGQNQICTKKTKIHCSCGNLKKEAACNAVRNSEQKIICDKSCEAKKVAARLEKEKETKRLKELEEEKNRRELEEYEWKLSGKKKKYKEKKVMIVTDNRNWIKKYWVPIMLGLIAIGSAIYYVFDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2