Basic Information

Insect: Myzus cerasi
Gene Symbol: -
Assembly: None
Location: Mc1051:13353-16366[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.027 3.7 8.8 3.9 1 23 111 133 111 133 0.98

2 13 2.6e-06 0.00035 21.5 5.1 1 23 140 162 140 162 0.99

3 13 3.7e-05 0.005 17.9 5.1 1 23 168 190 168 190 0.99

4 13 1.8e-06 0.00024 22.0 1.3 1 23 196 218 196 218 0.99

5 13 0.52 70 4.8 2.1 1 13 224 236 224 238 0.88

6 13 2.1e-05 0.0029 18.6 3.8 1 23 340 362 340 362 0.99

7 13 0.0011 0.15 13.2 3.4 1 23 368 390 368 390 0.97

8 13 2.9e-06 0.0004 21.3 6.3 1 23 395 417 395 417 0.99

9 13 7e-05 0.0094 17.0 4.5 1 23 423 445 423 445 0.99

10 13 3.3e-05 0.0045 18.0 0.6 1 23 451 473 451 473 0.98

11 13 3.1e-07 4.1e-05 24.4 1.9 1 23 479 501 479 501 0.98

12 13 0.00044 0.059 14.5 4.1 1 23 507 529 507 529 0.97

13 13 1.3e-07 1.8e-05 25.6 1.9 1 23 535 557 535 557 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.027	3.7	8.8	3.9	1	23	111	133	111	133	0.98
2	13	2.6e-06	0.00035	21.5	5.1	1	23	140	162	140	162	0.99
3	13	3.7e-05	0.005	17.9	5.1	1	23	168	190	168	190	0.99
4	13	1.8e-06	0.00024	22.0	1.3	1	23	196	218	196	218	0.99
5	13	0.52	70	4.8	2.1	1	13	224	236	224	238	0.88
6	13	2.1e-05	0.0029	18.6	3.8	1	23	340	362	340	362	0.99
7	13	0.0011	0.15	13.2	3.4	1	23	368	390	368	390	0.97
8	13	2.9e-06	0.0004	21.3	6.3	1	23	395	417	395	417	0.99
9	13	7e-05	0.0094	17.0	4.5	1	23	423	445	423	445	0.99
10	13	3.3e-05	0.0045	18.0	0.6	1	23	451	473	451	473	0.98
11	13	3.1e-07	4.1e-05	24.4	1.9	1	23	479	501	479	501	0.98
12	13	0.00044	0.059	14.5	4.1	1	23	507	529	507	529	0.97
13	13	1.3e-07	1.8e-05	25.6	1.9	1	23	535	557	535	557	0.99

Sequence Information

Coding Sequence: ATGCTTGCCTGTGCAGAAATGTCAAAAATGGACACTTGCGGCATTCAACAAATTAAGCTCGAATCAAACATCATTGTTGATGGTTTATTTTTCAACGAAACAAATATTAAATTAAATAGCACTAACAATCAAGTGATTCTATCAAATTCGTATAGTGATCAAAAATATATTCCAACCAAGATTCACAACAAATTGGAAAAAGATAATTATGATGTTTGTTATGATAAATCAAAGAGACTTAAACCTAAATGTAAAAAAAGTCAACAAATGTCCTTAAATAAACTAAATCTTGATACTCACCTCGAAATTCAACTGCCTATAAAACAGTCCTATACGTGTACTGTTTGTCAAAAATTATTTCACTACAAATACCGATACGATGCTCACATACAAAGTCACAGCGTTGATAAACAAAAGTATAAGTGTAAAATTTGTGATAAATCTTTCACCCGTAAATACCATATTAGCATCCATAATAGAACACATACAGGTGAAAAACCTTATAAATGTGACCTATGTGAGAAATTGTTTTCAATGAAACATCATCTCTTATCTCACATCAGAACTCATACTGGTGAAAAGCCTTACACTTGTGACATGTGTAATGAATCATTTACCCGTAAAGATATACTAAGCAAACATATTAGAACTCACATAGGAGAACAGCTTTTTACGTGTGTAAAATGTCATAAACAATTTTCTATGAAAACATACACAGGAGAGAAACAATATTTCTGTCATTTGTGTCAGCAGATCGAGCCTCAATCAAATATGATGAACAACATAAATACTAATCTAAATCATAGCTTTGGCTTAGAAATGTATGACAATGTTAAATTTATTGAAGCAACAGACATCATTGACATAAAATATGAAAACAACATAGAAAATAGTGACAATGAGTCAAAGATTCTATCATATCAACCATATAATGAAATGTTGAATTACCCTAAAGAATTTCAATCTGATGTAAAATGTCTTGAAACATTCTGTAGTGTAGAGTTTAAAGAAAAACCGTATAAATGTCACATGTGTCAGCAATTATTTTCTAATAAACAAAATCTTGATTCTCACATTAGAAGTCATACTACAAAACAACCTTATACATGTACAATTTGTAAGAAATCATTTTTCTATAAGTATCGTTTTGATGCTCACATAACAAATCACAAAATGGACAAGTATAAATGTAAAATTTGTGAGAAATCTTTTACCCGTAAATACCATTTTGATACTCATTATAGAATACATACTGGTGAAAAACCTTTTAAATGTGAAATATGTCTGAAATTATTTTCACTAAAGCATCACCTTATATCACACATTAGGACTCACACGGGTGAGAAACCGTTTAATTGTGAGCTTTGTAATGAATCATTTCGCCGTAAAGATATACTTAGTAATCATATTAGAATTCACACTGGAGAAAAACAATTTGTTTGTGATTATTGCGAAAAACAGTTCTCCATGAAACAATATTTAATAAGACATATGAGAACGCATACTGGAGAAAAACCATTCATTTGTCATGTGTGTCAAAAAAGGTTTTCGCAACGATCTGGACTTGATTGTCATATAAGAATCCACACTGGGGAGAAACCATTTCAATGCAAGGTGTGCAAGAAATTATTTTCTAGAAGAGACAATCTAACAATCCATATGTTGACACATTATTCCAATTTAGAAATTGACTTTTCTAAATGA
Protein Sequence: MLACAEMSKMDTCGIQQIKLESNIIVDGLFFNETNIKLNSTNNQVILSNSYSDQKYIPTKIHNKLEKDNYDVCYDKSKRLKPKCKKSQQMSLNKLNLDTHLEIQLPIKQSYTCTVCQKLFHYKYRYDAHIQSHSVDKQKYKCKICDKSFTRKYHISIHNRTHTGEKPYKCDLCEKLFSMKHHLLSHIRTHTGEKPYTCDMCNESFTRKDILSKHIRTHIGEQLFTCVKCHKQFSMKTYTGEKQYFCHLCQQIEPQSNMMNNINTNLNHSFGLEMYDNVKFIEATDIIDIKYENNIENSDNESKILSYQPYNEMLNYPKEFQSDVKCLETFCSVEFKEKPYKCHMCQQLFSNKQNLDSHIRSHTTKQPYTCTICKKSFFYKYRFDAHITNHKMDKYKCKICEKSFTRKYHFDTHYRIHTGEKPFKCEICLKLFSLKHHLISHIRTHTGEKPFNCELCNESFRRKDILSNHIRIHTGEKQFVCDYCEKQFSMKQYLIRHMRTHTGEKPFICHVCQKRFSQRSGLDCHIRIHTGEKPFQCKVCKKLFSRRDNLTIHMLTHYSNLEIDFSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01033215; iTF_01167905; iTF_01305857; iTF_00463523; iTF_00942085; iTF_01304363; iTF_01329196; iTF_00136320; iTF_00135600; iTF_00019586; iTF_01038663; iTF_00973225; iTF_00134750;
90% Identity: iTF_01038663;
80% Identity: -