Basic Information

Insect: Myzus persicae
Gene Symbol: -
Assembly: GCA_001856785.1
Location: NW:321520-325590[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.025 1.9 8.8 3.9 1 23 111 133 111 133 0.98

2 13 2.4e-06 0.00019 21.5 5.1 1 23 140 162 140 162 0.99

3 13 4.7e-05 0.0037 17.4 6.3 1 23 168 190 168 190 0.99

4 13 5.4e-06 0.00042 20.3 1.2 1 23 196 218 196 218 0.99

5 13 0.48 37 4.8 2.1 1 13 224 236 224 238 0.88

6 13 1.9e-05 0.0015 18.6 3.8 1 23 347 369 347 369 0.99

7 13 0.001 0.079 13.2 3.4 1 23 375 397 375 397 0.97

8 13 2.7e-06 0.00021 21.3 6.3 1 23 402 424 402 424 0.99

9 13 6.4e-05 0.005 17.0 4.5 1 23 430 452 430 452 0.99

10 13 3e-05 0.0024 18.0 0.6 1 23 458 480 458 480 0.98

11 13 2.8e-07 2.2e-05 24.4 1.9 1 23 486 508 486 508 0.98

12 13 0.0004 0.031 14.5 4.1 1 23 514 536 514 536 0.97

13 13 1.8e-07 1.4e-05 25.0 2.2 1 23 542 564 542 564 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.025	1.9	8.8	3.9	1	23	111	133	111	133	0.98
2	13	2.4e-06	0.00019	21.5	5.1	1	23	140	162	140	162	0.99
3	13	4.7e-05	0.0037	17.4	6.3	1	23	168	190	168	190	0.99
4	13	5.4e-06	0.00042	20.3	1.2	1	23	196	218	196	218	0.99
5	13	0.48	37	4.8	2.1	1	13	224	236	224	238	0.88
6	13	1.9e-05	0.0015	18.6	3.8	1	23	347	369	347	369	0.99
7	13	0.001	0.079	13.2	3.4	1	23	375	397	375	397	0.97
8	13	2.7e-06	0.00021	21.3	6.3	1	23	402	424	402	424	0.99
9	13	6.4e-05	0.005	17.0	4.5	1	23	430	452	430	452	0.99
10	13	3e-05	0.0024	18.0	0.6	1	23	458	480	458	480	0.98
11	13	2.8e-07	2.2e-05	24.4	1.9	1	23	486	508	486	508	0.98
12	13	0.0004	0.031	14.5	4.1	1	23	514	536	514	536	0.97
13	13	1.8e-07	1.4e-05	25.0	2.2	1	23	542	564	542	564	0.99

Sequence Information

Coding Sequence: ATGCTTGCCTGTGCAGAAATGTCAAAAATGGACACTTGCGGCATTCAACAAATTGAGCTCAGATCAAACATTATTGttgatggtttattttttaacgaaacaaatattaaattaaatagtaccaACAATCAAGTGATTCTATCAGATTCGTATattgatcaaaaatatattccaacAGAGATTCACAACAAATTGGAAAAGGATGATTATGATGTTTgtaatgataaatcaaaaaGACTTAAacctaaatgtaaaaaaagtcaACAAATGTccttaaataaactaaatcttGATACTCACCTCGAAATTCAACTACCTATAAAACAGTCCTATACATGTACTGTTTGTCAAAAACTATTTCACTACAAATACCGATATGATGCTCACATACAAAGTCACAGTGTTGACAAACAAAAGTATAAGTGTAAAATTTGTGATAAATCTTTCACACGCAAATACCATATTAGCATCCATAATAGAACACATACAGGTGAAAAACCTTATAAATGCGACCTATGTAAGAAATTGTTTTCAATGAAACATCATCTTTTGTCTCACATCAGAACTCATACAGGTGAAAAGCCTTACACTTGTGACATGTGTAATGAATCATTTACCCGTAAAGATATACTGAGCAAGCATGTTCGAACTCACATAGGCGAACAGCTTTTTACATGTGTAAAATGTCATAAACAATTCTCTATGAAAACATACACAGGAGAGAAACAATATTTCTGTCATTTGTGTCAACAGATCGAGCCTCAATCAGATATGATAAACaacataaatactaatattaataatagcttTGGCTTAGAAATGTATGACAATGATAAACTTATTGAAACAACAGACATCAttgacataaaatatgaaaacaacaTAGAAAATAGTGACAACGAGCCAAAGATTCTAATGTCAGTATCAAACATGTTATCATATCAACCATATAATGAAATGTTGAATAACACTAAAGAATTTCAATCTGATGTCAAATGTCTGGAAACATTCTGTAGTGTAGAGTTTAAAGAAAAACCGTATAAATGTCACATGTGTCAGcaattgttttctaataaacAAAACCTCGATTCTCACATTAGAAGTCATACTACAAAACAACCTTATAcatgtacaatttgtaaaaaatcatttttctataAGTATCGTTTTGATGCCCATATAACAAATCACAAAATGGacaagtataaatgtaaaatttgtgAGAAATCTTTTACCCGTAAATACCATTTTGATACTCATTATAGAATACATACTGGTGAAAAACCttttaaatgtgaaatatgtctaaaattattttcactaaaacATCACCTTATATCACATATTAGGACTCACACAGGCGAGAAACCGTTTAATTGTGAGCTTTGTAATGAATCATTTCGCCGTAAAGATATACTTAGTAATCATATTAGGATTCACACTGgagaaaaacaatttgtttgtgATTATTGCGAAAAACAGTTCTctatgaaacaatatttaataagacaTATGAGAACACACACTGGAGAAAAACCATTCATTTGTCATGTGTGTCAAAAAAGGTTTTCACAGCGATCTGGACTTGATTGTCATATACGAATCCACACTGGGGAGAAACCGTTTCAATGCAAGGTGTGTAAGAAACTATTTTCTAGAAGAGACAATCTAACCATCCATATGTCGACCCATTATTCAAGTATAGAAGTTGACttttcaaaatga
Protein Sequence: MLACAEMSKMDTCGIQQIELRSNIIVDGLFFNETNIKLNSTNNQVILSDSYIDQKYIPTEIHNKLEKDDYDVCNDKSKRLKPKCKKSQQMSLNKLNLDTHLEIQLPIKQSYTCTVCQKLFHYKYRYDAHIQSHSVDKQKYKCKICDKSFTRKYHISIHNRTHTGEKPYKCDLCKKLFSMKHHLLSHIRTHTGEKPYTCDMCNESFTRKDILSKHVRTHIGEQLFTCVKCHKQFSMKTYTGEKQYFCHLCQQIEPQSDMINNINTNINNSFGLEMYDNDKLIETTDIIDIKYENNIENSDNEPKILMSVSNMLSYQPYNEMLNNTKEFQSDVKCLETFCSVEFKEKPYKCHMCQQLFSNKQNLDSHIRSHTTKQPYTCTICKKSFFYKYRFDAHITNHKMDKYKCKICEKSFTRKYHFDTHYRIHTGEKPFKCEICLKLFSLKHHLISHIRTHTGEKPFNCELCNESFRRKDILSNHIRIHTGEKQFVCDYCEKQFSMKQYLIRHMRTHTGEKPFICHVCQKRFSQRSGLDCHIRIHTGEKPFQCKVCKKLFSRRDNLTIHMSTHYSSIEVDFSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01032356;
90% Identity: iTF_01038663;
80% Identity: -