Basic Information

Insect: Aphis glycines
Gene Symbol: -
Assembly: GCA_009928515.1
Location: scaffold:98140-102126[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.04 3.4 8.4 3.0 1 23 111 133 111 133 0.98

2 13 3e-06 0.00025 21.4 5.1 1 23 140 162 140 162 0.99

3 13 4e-05 0.0034 17.8 5.1 1 23 168 190 168 190 0.99

4 13 6.5e-06 0.00056 20.3 1.2 1 23 196 218 196 218 0.99

5 13 2.7 2.3e+02 2.7 0.9 2 13 225 236 224 238 0.86

6 13 2.4e-05 0.0021 18.5 3.8 1 23 345 367 345 367 0.99

7 13 0.0013 0.11 13.1 3.4 1 23 373 395 373 395 0.97

8 13 3.4e-06 0.00029 21.2 6.3 1 23 400 422 400 422 0.99

9 13 0.00026 0.022 15.3 4.5 1 23 428 450 428 450 0.99

10 13 3.8e-05 0.0032 17.9 0.6 1 23 456 478 456 478 0.98

11 13 3.2e-07 2.7e-05 24.5 2.4 1 23 484 506 484 506 0.98

12 13 0.0005 0.043 14.4 4.1 1 23 512 534 512 534 0.97

13 13 3.5e-07 3e-05 24.3 1.6 1 23 540 562 540 562 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.04	3.4	8.4	3.0	1	23	111	133	111	133	0.98
2	13	3e-06	0.00025	21.4	5.1	1	23	140	162	140	162	0.99
3	13	4e-05	0.0034	17.8	5.1	1	23	168	190	168	190	0.99
4	13	6.5e-06	0.00056	20.3	1.2	1	23	196	218	196	218	0.99
5	13	2.7	2.3e+02	2.7	0.9	2	13	225	236	224	238	0.86
6	13	2.4e-05	0.0021	18.5	3.8	1	23	345	367	345	367	0.99
7	13	0.0013	0.11	13.1	3.4	1	23	373	395	373	395	0.97
8	13	3.4e-06	0.00029	21.2	6.3	1	23	400	422	400	422	0.99
9	13	0.00026	0.022	15.3	4.5	1	23	428	450	428	450	0.99
10	13	3.8e-05	0.0032	17.9	0.6	1	23	456	478	456	478	0.98
11	13	3.2e-07	2.7e-05	24.5	2.4	1	23	484	506	484	506	0.98
12	13	0.0005	0.043	14.4	4.1	1	23	512	534	512	534	0.97
13	13	3.5e-07	3e-05	24.3	1.6	1	23	540	562	540	562	0.99

Sequence Information

Coding Sequence: ATGCTTGCCTGTGCAGAAATTTCAAAAATGGACACATGCGGTATTCAACAGATTACACTTGAATCAAATATTATTGTTGATGGTTTATTTTTCAATGAAACAAATATTAAATTAAATAGTTCTCAAGATGAAGTGATACTATCAGATTCATCCAGTGATCAAAAATATATTCCAACAAATACTTGCAACAAATCGAAAATAGATCATTTAGATGTTAGTAATAATAAATCAAAGAAACATAAGCTTAAATTAAAAAAAAGTCAACAAATATCCTTAAATAAACTAAACCTTAACACTCGCCTGAAAATTCAACCATCCATAAAACAGTCCTATATATGTACTGTTTGCCAAAAATTATTTCACTACAAATACCGATACGATGCTCATATACAAAGTCATAATATTGAAAAACAAAAATATAAGTGTAAAATTTGTGATAAATCTTTCACACGTAAATATCATATCAGCATCCATAATAGAACACATACAGGTGAAAAACCATATAAATGTGAACTATGTGAGAAATTGTTTTCAATGAAACATCATCTCTTGTCTCATATCAGAACTCATACAGGTGAAAAGCCTTACACTTGTGAAATGTGTAATGAATCATTTACCCGCAAAGATATTCTGAGCAAGCACGTTAGAACTCACATAGGAGAACAACTTTCAACATGTGTAAAATGTCAAAAACAATTTTCTATGAAAACGTACACTGGAGAGAAACAATACTTCTGTCATTTGTGTCAACAAATCGAGCCTCAATCCAATATTATGAATAACATTAACACTAATTTAAATCATGACTTAGAAATGTTTGACAATGACAAATGTATTGAGACAACAGACCTCATTGATATAAAATATGAAAACAACATAGAAAATAGTGATGATGAATCAAAAATTCTAATGTCTCCATCAAACATGTTAACATATCAACCCTATGATGAAATGCTGAATAACACTAAAGAATTTCAATCTGATGTAAAATGCCTTGAGACATTCTGCAGTGTAGAATTTAAAGAAAAACCATATAAATGTCATATGTGTCAGCAATTATTTTCTAATAAACAAAATCTTGATTCTCACATAAGAAGTCATACTACAAAACAACCTTATACATGTACAATTTGTAAGAAATCGTTTTTCTACAAATACCGTTTTGATGCTCATATAACTAATCATAAGATGGACAAATATAAATGTAAAATTTGTGAGAAATCTTTCACCCGAAAGTACCATTTTGATACTCATTATAGAATACACACTGGTGAAAAACCGTTTAAATGTGAAATATGTCTGAAATTATTTTCGTTAAAACATCACCTTATATCCCACGTTAGAACTCACACTGGTGAGAAACCGTTTAATTGTGAGCTTTGTAATGAATCATTTCGCCGTAAAGATATACTTAGTAATCATATTAGAATTCATACTGGAGAAAAACAATTTGTTTGTAATTATTGTGAAAAACAATTCTCTATGAAACAATATCTTATACGACATATGAGAACACACACTGGGGAAAAACCATTCATTTGTCATGTATGTCAAAAAAGGTTTTCTCAGCGATCTGGCCTTGATTGTCATATAAGAATCCACACTGGAGAGAAACCGTTTCAATGTGAGGTATGTAAAAAACTATTTTCTAGAAGAGACAATTTAACACTCCATATGTCAACACATAATATTAATATAGAAAATGAAACCGATGATTTTTTATCAACAAGTGTGTATTGCAATGATGAAGCAATTAAAAAACCTAATTGTTAA
Protein Sequence: MLACAEISKMDTCGIQQITLESNIIVDGLFFNETNIKLNSSQDEVILSDSSSDQKYIPTNTCNKSKIDHLDVSNNKSKKHKLKLKKSQQISLNKLNLNTRLKIQPSIKQSYICTVCQKLFHYKYRYDAHIQSHNIEKQKYKCKICDKSFTRKYHISIHNRTHTGEKPYKCELCEKLFSMKHHLLSHIRTHTGEKPYTCEMCNESFTRKDILSKHVRTHIGEQLSTCVKCQKQFSMKTYTGEKQYFCHLCQQIEPQSNIMNNINTNLNHDLEMFDNDKCIETTDLIDIKYENNIENSDDESKILMSPSNMLTYQPYDEMLNNTKEFQSDVKCLETFCSVEFKEKPYKCHMCQQLFSNKQNLDSHIRSHTTKQPYTCTICKKSFFYKYRFDAHITNHKMDKYKCKICEKSFTRKYHFDTHYRIHTGEKPFKCEICLKLFSLKHHLISHVRTHTGEKPFNCELCNESFRRKDILSNHIRIHTGEKQFVCNYCEKQFSMKQYLIRHMRTHTGEKPFICHVCQKRFSQRSGLDCHIRIHTGEKPFQCEVCKKLFSRRDNLTLHMSTHNINIENETDDFLSTSVYCNDEAIKKPNC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01032356;
90% Identity: iTF_00973225;
80% Identity: -