Basic Information

Insect: Mythimna separata
Gene Symbol: lolal
Assembly: GCA_030763345.1
Location: CM061167.1:30011326-30018188[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 6.6e-16 6.2e-13 49.3 0.0 1 42 324 366 324 369 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	6.6e-16	6.2e-13	49.3	0.0	1	42	324	366	324	369	0.94

Sequence Information

Coding Sequence: ATGACGCAGCAGTACAGCTTGCGGTGGAACAACCACCAGCCGAACTTCATCTCGATGTTCACCACGCTGCTCAACACACAGACGCTGGTGGACGTCACGCTGTCTGCCGACGGCAAGCAGCTTCTCGCACACAAAGTTGTCCTCTCGGCTTGCAGCACTTATTTCCAAACGCTGTTTGTTGAGAACCCGTCGCCGCATCCGATAGTGATCCTGAAGGATGTGACGTACGCCGATCTACGTGCCATGGTCGACTTCATGTACTGCGGGGAGGTCAATGTCACCGAGGAGCAGTTGCCACAGGTGCTGGACACCGCTAAACTGCTGAAGGTCAAAGGCCTGACGGACATGCCTCCCGACTCCACGCTGACGCGCTCGCAGGGCCCGTCCGCCGAGTTCCAGAGCCAGGGCGACTCGCTGGACTCCACGCGCCACTCGCCGGCCGCCTCACCCTCCAATAAACGCAGGAGGCGCCGAAAAAGTTCAACGAGTTCGACGCAGCTAAACGTGCTGGAGAACGAGCACGGACGCGCCGACGTGAGCGCGCAGACCGTGGAGGCCATCACGCTGAGCAGCGTGCCGCAGCAGCGGCGCATGCGGGAGTACCACGAGATCCGGACCATCGACAACTCGCAGCAGGTAGACGACACAACAGAACAGGATAACATGAATGTGGAGCCCATCGGAATGGAAAATACGACCCCGACAGCGATCCCTCAAGGAGGACAGTGGACCATGATGGAGCACTCGTACCCGCGATACTCGAACGCGTGCATAGGCGGCGGCGCGCTGCAGCAGGACCCCGGCCTGTACATGAACAACGTGATGAACCCGCACATGGACGCCGAGCTCAGCTACGCGCAGGGGCTGGGCGTGGCGGGCCCCTCGCCCGGCCCCTCGTGCGCCGACGTGCAGCCCGCCGACCccacgccgcccgcgccgcccaagCGCCGCCGCACCACCAACCCGCAGTCCGAGGAGAACTTCCAGCGCGCGCTCGAGGCCGTGCGCTTCGGCGGCATCGGCTTCTGCAAGGCGGCGCGCATGTTCGGCGTCAACAACCGCACGCTCTGGCTCGAGTACAAGAAGAAGGGCTACCCCAACAACCGGCCCAGCATCAAGAGCAGGATCAAGCGCGAGCACACGACGCCGCCGCCCGAGCACAAGGAGGAGCCCGCGCAGCCCGAGCAGCAGATGGCGCTGCTGTGCCCGCAGCACCAGGTGCCGCCCGGCTTCCTCGACCCCGGCGCGTCGCACGGCTTCCCGCTGCAGAGCGTGGCGCACTCGTCGCCCCTCAACCTCCTCGGCGTCAACTTCAACTCGATGCAATAG
Protein Sequence: MTQQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLSADGKQLLAHKVVLSACSTYFQTLFVENPSPHPIVILKDVTYADLRAMVDFMYCGEVNVTEEQLPQVLDTAKLLKVKGLTDMPPDSTLTRSQGPSAEFQSQGDSLDSTRHSPAASPSNKRRRRRKSSTSSTQLNVLENEHGRADVSAQTVEAITLSSVPQQRRMREYHEIRTIDNSQQVDDTTEQDNMNVEPIGMENTTPTAIPQGGQWTMMEHSYPRYSNACIGGGALQQDPGLYMNNVMNPHMDAELSYAQGLGVAGPSPGPSCADVQPADPTPPAPPKRRRTTNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTTPPPEHKEEPAQPEQQMALLCPQHQVPPGFLDPGASHGFPLQSVAHSSPLNLLGVNFNSMQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01361512;
90% Identity: iTF_01030371; iTF_01025955; iTF_00888401; iTF_01029141; iTF_01029398; iTF_00888155; iTF_01028187; iTF_01026461; iTF_01028447; iTF_01027222; iTF_01027475; iTF_01031256; iTF_01031056; iTF_00851950; iTF_00851691; iTF_01230452; iTF_01230763; iTF_00771799; iTF_00772146; iTF_00973911; iTF_00973684; iTF_00111547; iTF_00111795; iTF_01117479; iTF_01119239; iTF_01119504; iTF_01117115; iTF_00850908; iTF_00850546; iTF_00951965; iTF_00951716; iTF_00300096; iTF_00300377;
80% Identity: iTF_01030371;