Mbra000317.2
Basic Information
- Insect
- Mamestra brassicae
- Gene Symbol
- lolal
- Assembly
- GCA_905163435.1
- Location
- LR990987.1:5172303-5183797[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-15 5e-13 49.3 0.0 1 42 327 369 327 372 0.94
Sequence Information
- Coding Sequence
- ATGACGCAGCAGTATAGCCTGCGGTGGAACAACCACCAGCCGAACTTCATCTCGATGTTCACGACTCTCCTGAACACACAGACGTTGGTGGATGTCACACTGTCGGCTGACGGCAAGCAGCTACTGGCACACAAAGTGGTCCTGTCCGCTTGCAGCACCTATTTCCAAACCCTGTTTGTTGAGAACCCGTCGCCGCATCCTATTGTGATCCTGAAGGATGTCACGTACGCCGACCTGCGTGCGATGGTCGACTTCATGTACTGCGGGGAGGTCAATGTCACCGAGGAGCAGTTGCCACAGGTACTGGACACCGCCAAGCTGCTAAAGGTCAAGGGTCTGACTGACATGCCGCCCGACTCCACGCTGACGCGGTCACAGGGTCCGTCCGCCGAGTTCCAGAGCCAAGGGGGGGACTCGTTGGACTCCGCGCGTCACTCGCCGGCAGCTTCGCCGTCTAACAAACGCAGGAGGCGCCGAAAAAGTTCAACGAGCTCAACGCAGCTGAACGTGctcgagaacgagcacgggcgCGCCGACGTGGGCGCGCAGACTGTGGAGGCTATCACACTGAGCAGTGTGCCGCAGCAGCGACGCATGCGCGAGTACCATGAGATCCGGACCATCGACAACTCGCAGCAGGTAGACGACACAACAGAACAGGAAAACATGAACGTGGAGCCCATCGGAATGGAGAATACGACCCCAGCAGCAATCCCTCAAGGAGGACAGTGGACCATGATGGAGCACTCGTACCCGCGATACTCGAACGCGTGCATAGGCGGCGGTGCGCTGCAGCAGGACCCCGGCTTGTACATGAACAACGTCATGAACCCGCACATGGACGCCGAACTCAGCTACGCGCAGGGGATGGGCGTGGCAGGGCCTTCTCCCGGACCGTCGTGTGCCGACGTGCAGCCTACCGCCGAGCCCgcaccaccgccgccgccgcccaaGCGCCGCCGCACCAGCAACCCGCAGTCCGAGGAGAACTTCCAGCGCGCGCTCGAGGCCGTGCGCTTCGGTGGCATCGGCTTCTGCAAGGCGGCACGCATGTTTGGCGTTAACAACCGCACTCTTTGGCTCGAGTATAAGAAGAAGGGCTACCCCAACAACCGGCCCAGCATCAAGAGCAGGATCAAGCGCGAGCACACCACGCCGCCGCCCGAGCACAAAGACGAGCCGGCGCAGCCCGAGCAGCAGATGGCACTGCTGTGCCCGCAGCACCAGGTGCCGCCCGGCTTCCTGGACCCCAGCGCGCCGCATGGCTTTCCGCTGCAGAGCGTGGCGCACTCGTCGCCCCTCAACCTCCTCGGCGTGAACTTCAACTCGATGCAATAG
- Protein Sequence
- MTQQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLSADGKQLLAHKVVLSACSTYFQTLFVENPSPHPIVILKDVTYADLRAMVDFMYCGEVNVTEEQLPQVLDTAKLLKVKGLTDMPPDSTLTRSQGPSAEFQSQGGDSLDSARHSPAASPSNKRRRRRKSSTSSTQLNVLENEHGRADVGAQTVEAITLSSVPQQRRMREYHEIRTIDNSQQVDDTTEQENMNVEPIGMENTTPAAIPQGGQWTMMEHSYPRYSNACIGGGALQQDPGLYMNNVMNPHMDAELSYAQGMGVAGPSPGPSCADVQPTAEPAPPPPPPKRRRTSNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTTPPPEHKDEPAQPEQQMALLCPQHQVPPGFLDPSAPHGFPLQSVAHSSPLNLLGVNFNSMQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01247249;
- 90% Identity
- iTF_01030123;
- 80% Identity
- iTF_00951965;