Basic Information

Insect: Mythimna pallens
Gene Symbol: -
Assembly: GCA_961205895.1
Location: OY540837.1:22180660-22186419[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00094 0.096 14.1 0.8 1 23 293 316 293 316 0.94

2 12 0.0034 0.35 12.4 2.2 1 19 326 344 326 348 0.92

3 12 2.5e-05 0.0025 19.1 3.7 2 23 354 375 353 375 0.97

4 12 0.00049 0.05 15.0 1.1 1 23 379 402 379 402 0.94

5 12 0.031 3.1 9.4 0.7 2 23 406 427 405 427 0.95

6 12 0.0016 0.16 13.4 0.3 3 23 501 521 500 521 0.96

7 12 0.059 6 8.5 0.3 2 23 541 563 540 563 0.96

8 12 9.9e-07 0.0001 23.5 4.1 1 23 569 591 569 591 0.98

9 12 2.3e-05 0.0023 19.2 3.0 1 23 596 618 596 618 0.98

10 12 0.0009 0.092 14.2 4.4 3 21 626 644 624 647 0.94

11 12 5.2 5.3e+02 2.3 1.2 1 19 655 673 655 678 0.87

12 12 0.031 3.2 9.3 2.2 3 19 687 703 686 708 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00094	0.096	14.1	0.8	1	23	293	316	293	316	0.94
2	12	0.0034	0.35	12.4	2.2	1	19	326	344	326	348	0.92
3	12	2.5e-05	0.0025	19.1	3.7	2	23	354	375	353	375	0.97
4	12	0.00049	0.05	15.0	1.1	1	23	379	402	379	402	0.94
5	12	0.031	3.1	9.4	0.7	2	23	406	427	405	427	0.95
6	12	0.0016	0.16	13.4	0.3	3	23	501	521	500	521	0.96
7	12	0.059	6	8.5	0.3	2	23	541	563	540	563	0.96
8	12	9.9e-07	0.0001	23.5	4.1	1	23	569	591	569	591	0.98
9	12	2.3e-05	0.0023	19.2	3.0	1	23	596	618	596	618	0.98
10	12	0.0009	0.092	14.2	4.4	3	21	626	644	624	647	0.94
11	12	5.2	5.3e+02	2.3	1.2	1	19	655	673	655	678	0.87
12	12	0.031	3.2	9.3	2.2	3	19	687	703	686	708	0.94

Sequence Information

Coding Sequence: ATGGAAGGCGAAGAGAATCACGTAAATTTCGATGGGCCCTACCCAATCCTGTTCATCCCAAAAGTGTGTACAACATTGGAGACCAATTGTGAACTGGCAGAAAATGTGTTTATACACTTGGATATTTCGTCACCAGACACAGAAGGCAATGAGACTGCTATTTACAAGGGTTTCTGTAACGTTAAAGTCATGGATGGCAAAGATATCAACATCAGGTACGCATCACCAAATAATTATTCAAGCATTGAGAACATGCCTGTGATTTTGACTGAAGCGAACCAGATAGCAATACCAGCTTACAATGATTCTCAAGTGTGGATTGACCCTGCCAGGAGCCCGTTTGTCTACAACAACTGTGACTCACCTATTGAGACTTACACCGTAAATCAGAGCACTGACAACCACGTTACTATAGAACAGCACAACACCTATATAATGCAGAATGTGTATAGTTACAACGAAGCTATTCGGTACTCTCCGGCTCGCGAGGAACAaaaggctgtgaaaaagatacAAGAGAATGTTCAGAATTCAGACGGTTATAACATGTATGAGGAGGATGAATTTGAGTGTGGGGTGTTTCTGTCTCAGATGTCCGAAGAGATCAATGAGAAGGATGCTCGGGCCCGTGATGAGAAGAATTTTGTTGGTCTACAGACAGACAATGGGGCATTGAAGCAGCTGATGTCTACAGACATACAATCTGTGTCAAGGCAACAGaagaccattttatttttgggtcACGACTCTCAGTCTGGACAAACGGTACAGAACATTGCCATTAATGATCCATCGTTGGAGTGCGTTGGAGCTGGTGAAGTGGAGAATGAAGTTACTATTGaggACAACAACACAACCAACCCACGTGCCAAAAAATACCAGTGTAACAAATGCAAACAGATATTTGACCAACTGTCTGCCTTCAAACTCCACGTGGTCAGCAGCCACCGGCTCTCCGTCTCCGGCAACCTTAAGTACATGTGCTCAGAATGCGGCAAAAGCTTGAAAAACCAAGAAAAGTTTGAGCAACACTGCCTCGGTCACGGCGACCCCGATCTAGAATGTAACAAGTGCCACAAAGTGTTCGCGTCAAAATTCACCTTACGCAATCATCGTAAGATACATTCTCGACAGTTCCCCTGTTCCTACTGTTCAAGGAGTTTTGGAACAGCGCAGGAATTACAAACACATTCGTCGAAATTCCACTTCACTTTGGTGTGCAAATCATGTTCGTTTGTTTGTGAGACATCCGCAGAGTTGACAGCTCATGAAAAACTTCACCCGAGCCTCTCTGAGTCCTCGTCTAGTTCTAGTGAATCTGACTTCGAGGAAGGAGTATTTGAGAAGATCAATGATGGTTCGGATTCACAAGATATTGTCAAACATGAGGAGGTGGAACATCTGCAAACTCCTGACTCGGTTATAGCAAAAGTAATGTCGAACAATATATTTCAAAGTAGTTCACAGACGAGTAAGAAACAGAGGAAGTCTAACAAGAACTGCGAAGTGTGTCTCAAAAAGTTCGACAGGATCGGCGACCTCAAGAGGCACCTCATCGAGCACGTGATCCGGAGTACGCTCGCCAAGAACCCAGTCAACAAGTACGGGGTCCTCAACATCCGATGCGAGATCTGTCAGGAAAAGGTATTTACAAAAATTGATCGGTACAAAGCACATTTGAGGGAACACGCAAAGCTCACTATCTACAAATGCACCTTCTGCGACAAGTCCTTTAGCGACTCCAGCAACTTTtctaagcacaaaaaaatccacgGCACCACCTATTTTCAATGTGACATGTGCCAGCGGAAGTTCAACTCCAAGAAAATGTTAACTCAACATATGgagtatcataaaaaaaataatccaattAACTGTCAATACTGCGATAAAGTGTTCCATTTTGAGTCAATGCTCAATAAGCATATGAGGTGTTCGCATACTAAAGAAACAACAAGCAAATTCAGGTGCAGGTTCTGCCGCCAATACTTCAGCAGTTTGAAGGAAAAGTGGGACCATGAGTGGACAGTTCATAATGTCAGGAAGGCGATTGTAGACTGCCTGATTTGTGGGTCCAGGTTCAGGAAGTATTCAGAGTTAAAGAGGCATTGCACGGAGGAACACGATACAGTCATACCTCCAGCTAAAAGGTTACTTAGATGGAATGAAATGAAGTTGAATGGGAAATTGAAATCGATCGATGAAGATCCGAACATGGCTGGTCCATGA
Protein Sequence: MEGEENHVNFDGPYPILFIPKVCTTLETNCELAENVFIHLDISSPDTEGNETAIYKGFCNVKVMDGKDINIRYASPNNYSSIENMPVILTEANQIAIPAYNDSQVWIDPARSPFVYNNCDSPIETYTVNQSTDNHVTIEQHNTYIMQNVYSYNEAIRYSPAREEQKAVKKIQENVQNSDGYNMYEEDEFECGVFLSQMSEEINEKDARARDEKNFVGLQTDNGALKQLMSTDIQSVSRQQKTILFLGHDSQSGQTVQNIAINDPSLECVGAGEVENEVTIEDNNTTNPRAKKYQCNKCKQIFDQLSAFKLHVVSSHRLSVSGNLKYMCSECGKSLKNQEKFEQHCLGHGDPDLECNKCHKVFASKFTLRNHRKIHSRQFPCSYCSRSFGTAQELQTHSSKFHFTLVCKSCSFVCETSAELTAHEKLHPSLSESSSSSSESDFEEGVFEKINDGSDSQDIVKHEEVEHLQTPDSVIAKVMSNNIFQSSSQTSKKQRKSNKNCEVCLKKFDRIGDLKRHLIEHVIRSTLAKNPVNKYGVLNIRCEICQEKVFTKIDRYKAHLREHAKLTIYKCTFCDKSFSDSSNFSKHKKIHGTTYFQCDMCQRKFNSKKMLTQHMEYHKKNNPINCQYCDKVFHFESMLNKHMRCSHTKETTSKFRCRFCRQYFSSLKEKWDHEWTVHNVRKAIVDCLICGSRFRKYSELKRHCTEEHDTVIPPAKRLLRWNEMKLNGKLKSIDEDPNMAGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00810403;
90% Identity: iTF_01027662; iTF_01031390; iTF_01030529; iTF_00888590; iTF_01026653; iTF_01230941; iTF_01028621;
80% Identity: -