Basic Information

Insect: Leucania comma
Gene Symbol: -
Assembly: GCA_958295575.1
Location: OY282475.1:22124227-22129971[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.001 0.11 14.1 0.8 1 23 294 317 294 317 0.94

2 12 0.0038 0.41 12.4 2.2 1 19 327 345 327 349 0.92

3 12 2.8e-05 0.003 19.1 3.7 2 23 355 376 354 376 0.97

4 12 0.00054 0.058 15.0 1.1 1 23 380 403 380 403 0.94

5 12 0.88 94 4.9 0.5 2 23 407 429 406 429 0.93

6 12 0.0018 0.19 13.4 0.3 3 23 502 522 501 522 0.96

7 12 0.065 7 8.5 0.3 2 23 542 564 541 564 0.96

8 12 1.1e-06 0.00012 23.5 4.1 1 23 570 592 570 592 0.98

9 12 2.6e-05 0.0027 19.2 3.0 1 23 597 619 597 619 0.98

10 12 0.00043 0.046 15.3 4.5 2 21 626 645 625 648 0.95

11 12 5.8 6.2e+02 2.3 1.2 1 19 656 674 656 679 0.87

12 12 0.035 3.7 9.3 2.2 3 19 688 704 687 709 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.001	0.11	14.1	0.8	1	23	294	317	294	317	0.94
2	12	0.0038	0.41	12.4	2.2	1	19	327	345	327	349	0.92
3	12	2.8e-05	0.003	19.1	3.7	2	23	355	376	354	376	0.97
4	12	0.00054	0.058	15.0	1.1	1	23	380	403	380	403	0.94
5	12	0.88	94	4.9	0.5	2	23	407	429	406	429	0.93
6	12	0.0018	0.19	13.4	0.3	3	23	502	522	501	522	0.96
7	12	0.065	7	8.5	0.3	2	23	542	564	541	564	0.96
8	12	1.1e-06	0.00012	23.5	4.1	1	23	570	592	570	592	0.98
9	12	2.6e-05	0.0027	19.2	3.0	1	23	597	619	597	619	0.98
10	12	0.00043	0.046	15.3	4.5	2	21	626	645	625	648	0.95
11	12	5.8	6.2e+02	2.3	1.2	1	19	656	674	656	679	0.87
12	12	0.035	3.7	9.3	2.2	3	19	688	704	687	709	0.94

Sequence Information

Coding Sequence: ATGGAAGGCGAAGAGAATCACGTGAATTTCGAAGGGCCCTACCCAATCCTGTTCATCCCAAAAGTGTGTACAACATTGGAGACCAATTGTGAGCTAGCAGAAAATGTGTTTATACACTTGGATATCTCATCACCAGACACAGAAGGCAATGAGACTGCCATTTACAAGGGATTCTGTAATGTTAAAGTCATGGATGGCAAGGATATCAACATCAGGTATGCATCACCAAATAATTATTCAAGTATTGAGAACATGCCTGTGATTCTGACTGAAGCGAATCAGATAGCAATACCAGCTTACAATGATTCTCAAGTGTGGATCGATCCGACAAGGAGCCCGTTTGTCTATAACAATTGTGACTCGCCTATTGAGACGTACACCGTAAATCAGAGCACTGACAACCATGTTACTATAGAACAGCACAACACCTACATAATGCAGAATGTGTACAGTTATAATGAAGCTATTCGGTACTCTCCGGCTTGCGAGGAACAAAAGACTGTGAAGAAGATACAAGAGAATGTTCAAAATTCGGACAGTTATAACATGTATGAGGAGGATGAATTTGAGTGTGGAGTATTTCTGTCTCAGATGTCCGAAGAGATTAACGAGAAGGATGCTCGGGCCCGTGATGAGAAGAATTTTGTTGGTCTACAGACAGACAATGGAGCATTAAAACAGCTGATGTCTACAGACATACAATCAGTGTCGAGGCAACAGAAgaccattttgtttttgggcCACGACTCTCAGTCTGGACAAACGGTTCAGAATATTGCCATCAATGATCCTACGGTGGAGTGCATTGGAGCTGGAGAAGTGGAGAATGAAATAACTATTGaagACAACATAACAACCAACAATCCACGCGCCAAAAAATACCAGTGCAACAAATGCAAACAGATATTTGACCAACTGTCTGCCTTCAAACTCCACGTGGTCAGCAGCCACCGGCTCTCAGTCTCCGGCAACCTTAAGTACATGTGCTCAGAATGCGGCAAAAGCCTGAAAAACCAAGAAAAGTTTGAGCAACACTGCCTCGGTCACGGCGACCCCGATCTAGAATGTAACAAGTGCCATAAAGTGTTCGCGTCAAAATTTACCTTACGCAACCATCGTAAGATACATTCTCGACAGTTCCCCTGTAGCTATTGTTCAAGAAGTTTCGGAACAGCGCAGGAATTGCAAACGCATTCGTCGAAATTTCACTTCACTTTGGTGTGCAAATCATGTTCGTTTGTTTGCGAAACTTCAGCGGAGATGGCAGCTCACGAAAAACTTACACACTCGAGCCTCTCCGAGTCCTCGGCGAGCTCCAGTGAATCTGAATTTGAGGAAGGAGTATTTGAGAAGATCAATGATGGTTCGGAGTCACAAGATATTGTCAAACATGAGGAGGATCATCTGCAAACTCCTGACTCGGTTATCGCGAAAGTGATGTCGAACAATATATTTCAAAGTAACTCACAGACAAGCAAGAAACAGAGGAAGTCTAACAAGAACTGCGAAGTATGTCTCAAAAAGTTCGACAGGATCGGCGACCTCAAGAGGCACCTCATTGAACACGTGATTCGGAGCACGCTCGCCAAGAACCCAGTCAACAAGTATGGAGTCCTCAACATCCGATGCGAGATCTGTCAGGAAAAGGTATTCACAAAAATTGACAGGTACAAAGCCCATTTGCGGGAACACGCCAAGCTCACTATCTACAAATGCACCTTCTGTGACAAGTCCTTTAGCGACTCTAGCAATTTTTCTAAGCACAAAAAAATCCACGGCACCACCTATTTTCAATGCGACATGTGCCAACGGAAGTTCAACTCCAAGAAAATGCTAACTCAGCATATGGAGTATCACAAAAAGAACGACCCAATTCAATGTCAATATTGCGATAAAGTGTTCCATTTTGAGTCGATGCTCAACAAGCATATGAGGTGTTCGCATACTAAAGAAACGATTAGCAAATTCAGGTGCAGGTTCTGCCGGCAGTACTTCAGCAGTTTGAAGGAGAAGTGGGACCATGAGTGGACAGTCCATAATGTCAGGAAGGCGATTGTAGATTGCCTGATTTGTGGGTCCAGATTCAGGAAATATTCGGAATTAAAGAGGCATTGCACCGAGGAACACGACACCGTCATACCTCCAGCTAAAAGGTTATTGAGATGGAATGAGATGAAATTGAATGGGAAATTGAAATCAATCGATGATGATCCGAACATGGCTGGTACATGA
Protein Sequence: MEGEENHVNFEGPYPILFIPKVCTTLETNCELAENVFIHLDISSPDTEGNETAIYKGFCNVKVMDGKDINIRYASPNNYSSIENMPVILTEANQIAIPAYNDSQVWIDPTRSPFVYNNCDSPIETYTVNQSTDNHVTIEQHNTYIMQNVYSYNEAIRYSPACEEQKTVKKIQENVQNSDSYNMYEEDEFECGVFLSQMSEEINEKDARARDEKNFVGLQTDNGALKQLMSTDIQSVSRQQKTILFLGHDSQSGQTVQNIAINDPTVECIGAGEVENEITIEDNITTNNPRAKKYQCNKCKQIFDQLSAFKLHVVSSHRLSVSGNLKYMCSECGKSLKNQEKFEQHCLGHGDPDLECNKCHKVFASKFTLRNHRKIHSRQFPCSYCSRSFGTAQELQTHSSKFHFTLVCKSCSFVCETSAEMAAHEKLTHSSLSESSASSSESEFEEGVFEKINDGSESQDIVKHEEDHLQTPDSVIAKVMSNNIFQSNSQTSKKQRKSNKNCEVCLKKFDRIGDLKRHLIEHVIRSTLAKNPVNKYGVLNIRCEICQEKVFTKIDRYKAHLREHAKLTIYKCTFCDKSFSDSSNFSKHKKIHGTTYFQCDMCQRKFNSKKMLTQHMEYHKKNDPIQCQYCDKVFHFESMLNKHMRCSHTKETISKFRCRFCRQYFSSLKEKWDHEWTVHNVRKAIVDCLICGSRFRKYSELKRHCTEEHDTVIPPAKRLLRWNEMKLNGKLKSIDDDPNMAGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00810403;
90% Identity: iTF_01029548;
80% Identity: -