Basic Information

Insect: Mythimna loreyi
Gene Symbol: -
Assembly: GCA_029852875.1
Location: CM056779.1:2527686-2536275[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.001 0.09 14.1 0.8 1 23 296 319 296 319 0.94

2 12 0.0043 0.37 12.2 2.2 1 19 329 347 329 351 0.92

3 12 2.7e-05 0.0024 19.1 3.7 2 23 357 378 356 378 0.97

4 12 0.00078 0.068 14.5 3.3 1 23 382 405 382 405 0.94

5 12 0.088 7.7 8.0 0.4 2 23 409 430 408 430 0.95

6 12 0.0018 0.15 13.4 0.3 3 23 502 522 501 522 0.96

7 12 0.11 9.9 7.7 0.3 2 23 542 564 541 564 0.96

8 12 1.1e-06 9.4e-05 23.5 4.1 1 23 570 592 570 592 0.98

9 12 2.5e-05 0.0022 19.2 3.0 1 23 597 619 597 619 0.98

10 12 0.001 0.088 14.1 4.7 2 21 626 645 625 648 0.95

11 12 5.7 5e+02 2.3 1.2 1 19 656 674 656 679 0.87

12 12 0.037 3.3 9.2 2.2 3 19 688 704 687 709 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.001	0.09	14.1	0.8	1	23	296	319	296	319	0.94
2	12	0.0043	0.37	12.2	2.2	1	19	329	347	329	351	0.92
3	12	2.7e-05	0.0024	19.1	3.7	2	23	357	378	356	378	0.97
4	12	0.00078	0.068	14.5	3.3	1	23	382	405	382	405	0.94
5	12	0.088	7.7	8.0	0.4	2	23	409	430	408	430	0.95
6	12	0.0018	0.15	13.4	0.3	3	23	502	522	501	522	0.96
7	12	0.11	9.9	7.7	0.3	2	23	542	564	541	564	0.96
8	12	1.1e-06	9.4e-05	23.5	4.1	1	23	570	592	570	592	0.98
9	12	2.5e-05	0.0022	19.2	3.0	1	23	597	619	597	619	0.98
10	12	0.001	0.088	14.1	4.7	2	21	626	645	625	648	0.95
11	12	5.7	5e+02	2.3	1.2	1	19	656	674	656	679	0.87
12	12	0.037	3.3	9.2	2.2	3	19	688	704	687	709	0.95

Sequence Information

Coding Sequence: ATGGAAGGCGAAGAGAATCACGTGAATTTTGAAGGGCCCTACCCAATCCTGTTCATCCCAAAAGTGTGTACAACATTGGAGACCAACTGTGAGCTGGCAGAAAATGTGTTTATACACTTGGATATATCATCACCAGATACTGAAGGCAATGAGACTGCCATTTACAAGGGTTTCTGTAATGTGAAGGTCATAGATGGGAGAGATATCAACATCAGGTATGCATCACCGAATAGTTATTCAAGTATTGAGAACATGCCTGTGATTCTGACAGAAGCAAACCAGATAGCAATACCAGCTTACAATGATTCTCAAGTATGGATAGATCCGGCAAGGAGCCCGTTTGTCTACAACCATTGTGAGTCACCGCCTATTGAGACGTACACCGTAAATCAGAGTACTACGGACAACCATGTAACTATAGAACAGCATAACACCTACATAATGCAGAATGTGTACAGTTACAATGAAGCTGTCCGGTACTCTCCGGCTGGTGAGGAACAAAAAACTGTGAAGAAGATACAGGAGAACGTTCAGAATTCGGACGGTTATAACATGTACGAGGAGGATGAATTTGAGTGTGGAGTGTTTCTGTCTCAGATGTCCGAAGAGATAAATGAGAAGGATGCTCGGGCCCGTGATGAGAAGAGCTTTGTTGGTCTACAGACGGACAATGGGGCGTTAAAACAGCTGATGTCTACGGACATACAATCTGTGTCGAGGCAACAGAAGACTATATTGTTTTTGGGCCATGACTCCCATTCTGGACAAACGGTTCAGAATATTGCCATCAATGATCCTACATTGGAGTGCGTTGGAGCTGGTGAGGTGGAGAATGAAGTCACTATTGAGGACAACAACACAACCAACAATCCACGCGCCAAAAAATACCAGTGCAACAAATGCAAACAGATATTTGACCAACTGTCTGCCTTCAAGCTCCACGTAGTCAGCAGCCACCGCCTCTCCGTCTCCGGCAACCTCAAGTACATGTGCTCAGAATGCGGGAAAACCTTGAAAAACCAAGAAAAGTTTGAGCAACACTGCCTCGGGCATGGCGACCCCGATCTAGAATGTAACAAGTGCCACAAAGTCTTCGCGTCAAAATTCACTTTACGCAATCACCGTAAGATACATTCTCGACAGTTCCCCTGTTCGTACTGCTCAAGGAGTTTTTGCACAGCGCAGGAGTTGGAAACTCATTCGTCGAAATTCCACTTTACCTTAATGTGCAAATCATGTTCGTTTGTTTGCGAGACTTCAGCGGAGTTAGCAGCTCATGCAAAACTCCACGCGACCCTCTCCGAGTCCTCAACAAGTTCTAGCGAATCTGACTTCGAGGATTTTGAGAAGATCAATGAAGGCTCGGAGTCACGAGGTGTTGTCAAACATGAGGAAGAGAATCTTTTACAAAATCATGATTCAGTTATCGCGAAAGTGATGTCGAacaatatatttcaaaataattcaaAGACAAGCAAGAAACAGAGGAAGTCTAATAAGAACTGCGAAGTGTGCCTCAAAAAGTTCGACAGGATCGGCGACCTCAAGAGACATCTTATCGAACACGTGATCCGGAGTACCCTCGCCAAGAACCCAGTAAACAAGTACGGCGTCCTCAACATCCGCTGCGAAGTCTGTCAGGAAAAGGTATTCACAAAGATTGACAGGTACAAAGCCCATTTGAGGGAGCACGCAAAACTCACCATCTACAAATGTACCTTCTGTGACAAATCCTTTAGCGACTCCAGCAATTTTTCTAAGCACAAAAAGATCCACGGCACCACCTTTTTCCAATGCGACATGTGCCAACGGAAGTTCAACTCCAAGAAAATGCTGACTCAGCATATGGagtaccacaaaaaaaacaacccAATTCAATGTCGATATTGTGATAAAGTGTTCCACTTTGAGTCGATGCTCAATAAACATATGAGGTGTTCACATACCAAGGAAACTACCAGCAAGTTCAGATGCAGATTCTGCCGCCAATATTTCAGCAGTTTGAAGGAAAAGTGGGACCATGAGTGGACAGTTCATAACGTCAGGAAGGCCATTGTAGACTGCCTGATCTGTGGGTCAAGGTTTAGGAAGTATTCGGAGTTAAAAAGGCATTGCACAGACGAACACGACACCATCATACCTCCAGCTAAAAGGTTGTTGAGATGGAATGAGATGAAGTTACATGGGAAATTGAAATCAATTGATCATGATCCGAACATGGCTGGTCCATGa
Protein Sequence: MEGEENHVNFEGPYPILFIPKVCTTLETNCELAENVFIHLDISSPDTEGNETAIYKGFCNVKVIDGRDINIRYASPNSYSSIENMPVILTEANQIAIPAYNDSQVWIDPARSPFVYNHCESPPIETYTVNQSTTDNHVTIEQHNTYIMQNVYSYNEAVRYSPAGEEQKTVKKIQENVQNSDGYNMYEEDEFECGVFLSQMSEEINEKDARARDEKSFVGLQTDNGALKQLMSTDIQSVSRQQKTILFLGHDSHSGQTVQNIAINDPTLECVGAGEVENEVTIEDNNTTNNPRAKKYQCNKCKQIFDQLSAFKLHVVSSHRLSVSGNLKYMCSECGKTLKNQEKFEQHCLGHGDPDLECNKCHKVFASKFTLRNHRKIHSRQFPCSYCSRSFCTAQELETHSSKFHFTLMCKSCSFVCETSAELAAHAKLHATLSESSTSSSESDFEDFEKINEGSESRGVVKHEEENLLQNHDSVIAKVMSNNIFQNNSKTSKKQRKSNKNCEVCLKKFDRIGDLKRHLIEHVIRSTLAKNPVNKYGVLNIRCEVCQEKVFTKIDRYKAHLREHAKLTIYKCTFCDKSFSDSSNFSKHKKIHGTTFFQCDMCQRKFNSKKMLTQHMEYHKKNNPIQCRYCDKVFHFESMLNKHMRCSHTKETTSKFRCRFCRQYFSSLKEKWDHEWTVHNVRKAIVDCLICGSRFRKYSELKRHCTDEHDTIIPPAKRLLRWNEMKLHGKLKSIDHDPNMAGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00810403;
90% Identity: iTF_01029548;
80% Identity: -