Mpal018670.1
Basic Information
- Insect
- Mythimna pallens
- Gene Symbol
- -
- Assembly
- GCA_961205895.1
- Location
- OY540839.1:20410010-20410681[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-07 6.7e-05 23.5 0.0 16 43 28 55 15 57 0.80
Sequence Information
- Coding Sequence
- atggttaacaaatataaaagaaaaacctcTAATGCATCATGGGACGAGGCAGTTATGAAACTTGCTATGGAAGAAGCTAGCAAAACCTCAGTGAAAGGTGCGGCTAAGAAGTACGGTATAAACTTATCCACGTTGCAGCGGCACATCAAAAAAGGATGCCCGAAGAAGAAACTTGGCAGGTACACAACTGTATTCACGGATCCTCAGGAACTCGAGCTTCTTGAATATGTGTTTCATATGGAAGGTTTGTTTTTTGGACTGACCAAGAAAGAATTCTTAGAACTCGTGTACCAATATGCCGAAAACAACAATATTCCACACCCATTCAAAAATGGAATGGCAGGTGAAGATTGGTACATTGGGTTTAAAGTACGAAATCCTGATTTAAGTCTACGCCGTCCAGAACCGACGTCATTAGCACGCGCTAGGGGTTTTAACAAACCACAAGTACAGAGGTTTTTCGATTTGCTAGAGGGAGAGATCGATAAACATAAAATTGACGCGACGCGCATTTACAATGTTGACGAAACTGGAATTCAGACTAATAGCAACAAGCCGCCTCGAGTTCTTAGTAGATCAGGAAAAAAACAGGTTGTTGTGATATCTAGTGTCGAGCGTGGTAAACTCACAACAGTGGTTTGCTGTTGCAATGAATGGTGCCAAGACTTCTAG
- Protein Sequence
- MVNKYKRKTSNASWDEAVMKLAMEEASKTSVKGAAKKYGINLSTLQRHIKKGCPKKKLGRYTTVFTDPQELELLEYVFHMEGLFFGLTKKEFLELVYQYAENNNIPHPFKNGMAGEDWYIGFKVRNPDLSLRRPEPTSLARARGFNKPQVQRFFDLLEGEIDKHKIDATRIYNVDETGIQTNSNKPPRVLSRSGKKQVVVISSVERGKLTTVVCCCNEWCQDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00855832;
- 90% Identity
- iTF_01178497; iTF_00172846; iTF_01264541;
- 80% Identity
- -