Acen023884.1
Basic Information
- Insect
- Atethmia centrago
- Gene Symbol
- -
- Assembly
- GCA_905333075.2
- Location
- HG995376.1:8497838-8498644[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.7e-07 0.00016 23.1 0.0 16 42 28 54 15 57 0.80
Sequence Information
- Coding Sequence
- ATGGTtaacaaatataaaagaaaaagctCTAATGCATCATGGGACGAGGCAGTTATGAAACTTGCTATGGAAGAAGCTAGCAAAACCTCAGTGAAAGGTGCGGCTAAGAAGTACGGTATAAACTTATCCACGTTGCAGCGGCACATCAAAAAAGGATGCCCGAAGAAGAAACTTGGCAGGTACACAACTGTATTCACGGATCCTCAGGAACTGGAGCTTCTTGAATATGTGTTTCATATGGAAGGTTTGTTTTTTGGACTGACGAAGAAAGAATTCTTAGAACTCGTGTACCAATATGCCGAAAACAACAATATTCCACACCCATTCAAAAATGGAATGGCAGGTGAAGATTGGTACATTGGGTTTAAAGTACGACATCCTGATTTAAGTCTACGCCGTCCAGAACCGACGTCATTAGCACGCGCTAGGGGTTTTAACAAACCACAAGTACAGAGGTTTTTCGATTTGCTAGAGGGAGAGATCGATAAACATAAAATTGACGCGACGCGCATTTACAATGTTGACGAAACTGGAATTCAGACTAATAGCAACAAGCCGCCTAGAGTTCTTAGAAGATCAGGAAAAAAACAGGTTGGTGTGATATCTAGTGTCGAGCGTGGTAAACTCACAACAGTGGTTTGCTGTTGCAATGCAGCAGGTGCGTTTATTAATCTTTGGGAGAAAGCGAATGGTGCCAAGACTTCTAGATGGCGCTCCACCTGGATCAGTCGCAAGCTGCACAGACAACGGCTGGATAAATGGCCCAATATTCTTAGACTGGCTTCGACATTTTGTGGCTATGACTAG
- Protein Sequence
- MVNKYKRKSSNASWDEAVMKLAMEEASKTSVKGAAKKYGINLSTLQRHIKKGCPKKKLGRYTTVFTDPQELELLEYVFHMEGLFFGLTKKEFLELVYQYAENNNIPHPFKNGMAGEDWYIGFKVRHPDLSLRRPEPTSLARARGFNKPQVQRFFDLLEGEIDKHKIDATRIYNVDETGIQTNSNKPPRVLRRSGKKQVGVISSVERGKLTTVVCCCNAAGAFINLWEKANGAKTSRWRSTWISRKLHRQRLDKWPNILRLASTFCGYD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00855835;
- 90% Identity
- iTF_01029206;
- 80% Identity
- -