Mpal027257.1
Basic Information
- Insect
- Mythimna pallens
- Gene Symbol
- -
- Assembly
- GCA_961205895.1
- Location
- OY540848.1:412050-413867[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-09 2.5e-06 28.0 0.0 4 37 14 47 12 53 0.91 2 2 9.5 4.1e+03 -1.5 0.0 19 33 170 184 161 192 0.70
Sequence Information
- Coding Sequence
- ATGGCTACAAAACGAAAATATTATGCGTGGAATGAAGTAAGCATGAACCTAGCCATTGAATCAGTGCGTAAAAATAAAGCAGGTTTGAATGAGGCAAGTAGGATGTATGGAGTGCCTAAAGCCACACTAAAACGAAGATGGGATGGTGTGAATCAAAAGGCTAAGGAACATGTTCAAATAGTAGGATCTGAAGGTGATCTTCCGTCAGAATTGGAAACCGAATTATGTCAACACATCCTCGAGATGGAAAGTAGTTTGTATGGTGTAACGCCTTTCGATATTCGGCAGCTGGCATTTGAACTGGCAGAAAAGAACAATATCAAAAATCGATTTAACAAAGAGAAAAGAATTGCAGGTAAAAAATGGTACTATGCGTTCATGAAGCGGCATCCACAATTAAGTTTGAGACAACCAAGAGCAACTTCAATGAGCCGGGCTACTGGATTTAACAAACCTGCTGTAACCGATTTCTTCAATAAATTAGAGGCAGTATGCGAAAAATACAACATAACAGAAGCGCAGCGTATCTTCAACGTTGATGAGACGGGCTTGTCAACTGTCCAGaggaaaacaagaaaaatactGGCATTAAAAGGTAAGCGGCAAGTTGGAGCTATTACTAGTGGAGAACGCGGTACAAATACTACAGCCGTATGTTGTGCTAATGCTGCTGGTAATTTTATACCACCGCTTATAATATTTAAGCGCAAGAGAGCAAAAGACGAACTCAGGGATGGAGCTCCACCTGGTACAATATTTGCTTTTAATCCAGAGAGTGGATATATTAACAAagacatattttatttgtggttacAACACTTTATTGAGTCTGTGAAGCCGACAcctgaaaaaaaagtattacttCTGTTAGATGGTCATGCTAGtcatacaaaaaatttaaaagctaTAACATATGCCAAGCAACACGGCGTCGTATTGCTTTCATTTCCAGCACATACAACACATAAAATGCAACCGCTGGATGTCTCCTTCTTCAAGCCGTTGAGCCTTTACTATATAGATGAAACAGAAAAATGGTTGCGCCAAAATCCTGGAAGAACTGTGACAATGTTTCAAGTTTCAATGCTATTCGGAAAAGCATATTCCCGAGCTGCATCTGTTGGAACTGCTACGAGTGGCTTTGCAAAGACTGGAATTTGTCCTCTTAATAAAGATGCATTTGCTGACTACGAATTCATTgtacctgaaaaagaaaacGATGAGATTTCACCACCAATTGTATTAGACTTACAGGATGATATAGATCCACTATCTTTGAATATTTCTTTACTAGAAGAGAATCTAGAAGTGACGGAGCCAATTACATGTCAAAATGAAGCTATGACTGCTGAATCTCAGATTGAAACCTTAGCGGTATCACAGAATATTGATTGTAGTACAGCTGAATCAAAGGCACGCAATTTCGAATTCACAATAAACCAAATATCTCCTGGAGCTAAAAAAGTAGCACAAGAGTTAAGACAAAGGAGTAAAAAAGCACAAAGTAGCTTGGAACTGACGTCGACGCCTTATAAAACCACTTTAGAACAAGCTATTGTAAGGCCTTCAAAACCGAAAAAGCCGAAATTTACTGCAAAAGAAACTgcattttctaaaaataaaataactgatgAGCCAGAGCCATCAACAAGCAAAGATGCCAAATCAGTAAATATCGAAAAATGGTTTTGCAAAATCTGCCTACTGTGTGCAGTTGAAGACATGATTCAATGTATGATGTGTAAAGCCTGGGTTCATGTAGAATGTGCCTGCGTTAAGAAAACTATTAAGAAGTATTTATGTCCTCAATGCAAATAa
- Protein Sequence
- MATKRKYYAWNEVSMNLAIESVRKNKAGLNEASRMYGVPKATLKRRWDGVNQKAKEHVQIVGSEGDLPSELETELCQHILEMESSLYGVTPFDIRQLAFELAEKNNIKNRFNKEKRIAGKKWYYAFMKRHPQLSLRQPRATSMSRATGFNKPAVTDFFNKLEAVCEKYNITEAQRIFNVDETGLSTVQRKTRKILALKGKRQVGAITSGERGTNTTAVCCANAAGNFIPPLIIFKRKRAKDELRDGAPPGTIFAFNPESGYINKDIFYLWLQHFIESVKPTPEKKVLLLLDGHASHTKNLKAITYAKQHGVVLLSFPAHTTHKMQPLDVSFFKPLSLYYIDETEKWLRQNPGRTVTMFQVSMLFGKAYSRAASVGTATSGFAKTGICPLNKDAFADYEFIVPEKENDEISPPIVLDLQDDIDPLSLNISLLEENLEVTEPITCQNEAMTAESQIETLAVSQNIDCSTAESKARNFEFTINQISPGAKKVAQELRQRSKKAQSSLELTSTPYKTTLEQAIVRPSKPKKPKFTAKETAFSKNKITDEPEPSTSKDAKSVNIEKWFCKICLLCAVEDMIQCMMCKAWVHVECACVKKTIKKYLCPQCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00784336;
- 90% Identity
- iTF_00667323;
- 80% Identity
- -