Hzea016371.1
Basic Information
- Insect
- Helicoverpa zea
- Gene Symbol
- -
- Assembly
- GCA_002150865.1
- Location
- KZ116687.1:64460-66262[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-10 1.8e-07 30.8 0.0 4 39 14 49 12 53 0.93 2 2 4.6 3.1e+03 -1.9 0.0 20 31 128 139 121 148 0.71
Sequence Information
- Coding Sequence
- ATGGCTACAAAACGAAAGTATTATGCGTGGAATGAAGTAAGCATGAACCTAGCCATTGAATCAGTGCGTAACAATAAAGCAGGTTTGAATGAGGCAAGTAGGATGTATGGAGTGCCTAAAGCCACACTAAAACGAAGATTGGATGGAGTGAATCGAAAGGCTAAGGAATATGTTCAAATAGTAGGATCTGAAGGTGACCTTCCGTCCGAATTGGAAACCGAATTATGTCAACACATCCTTGAGATGGAAAGTAGTTTGTATGGTGTAACGCCTTTCGATATTCGGCAGCTGGCATTTGAACTGGCAGAAAAGAACAATATCAAAAATCGATTTAACAAAGAGAAAAGAATTGCAGaGGCAGCATGCGAAAAATACAACATAACAGAAGCTCAGCGTATCTTCAACGTTGATGAGACTGGATTGTCAACTGTCCAGAGGAAAACCAGAAAAATACTGGCATTAAAAGGTAAGCGGCAAGTTGGAGCTATTACTAGTGGAGAACGCGGTACAAATACTACAGCCGTATGTTGTGCTAATGCTGCAGGTAATTTTATACCACCGCTTATAATATTTAAGCGCAAGAGAGCAAAAGACGAACTGAGGGATGGAGCTCCACCTGGTGCAATATTCGCTTTTAATCCAGAGAGTGGATATATTAAcaaagacatattttatttgtggttaCAACACTTTATTGAGTCTGTGAAGCCGACACCCGAAAAAAAAGTATTACCTCTGTTAGATGGTCATGCTAGCcatacaaaaaatttaaaagcaataaCATATGCCAAGCAACACGGCGTCGTCTTGCTTTCATTTCCAGCACATACAACACATAAAATGCAACCGCTGGATGTCTCCTTCTTCAAGCCGTTGAGTCTATACTATATAGATGAAACTGAAAAATGGTTGCGCCAAAATCCTGGAAGAACTGTGACAATGTTTCAAGTTTCAATGCTATTCGGAAAAGCATATTCCCGAGCTGCATCTGTTGGAACTGCTGCGAGTGGCTTTGCAAAGACTGGAATTTGTCCTCTTAATAAAGATGCATTTGCTGACTACGAATTCATTGTACCTGAAAAAGAAAACGATGAGATTTCACCACCAATTGTGTTAGACTTACAGGATGAGATAGATCCACTAACTTTGAATATTTCTTTACTAGAAGAGAATCTAGACCTGAATTTCGAATTCACAATAAACCAAATATCTCCTGGAGCTAAAAAAGTAGCACAAGAGTTaagaaaaagaagtaaaaaagcACAAAGTAGCTTGGAACTGACGTCGACGCCTTATAAAACCACTTTAGAACAAGCTATTGTAAGACCTTCAAAACCAAAAAAGCCAAAATTTTCTGCAAAAGAAACTgcattttctaaaaataaaataactgatgAGCCAGAGCCATCAACAAGCAAAGATGCCAAATCAGTAAATATCGAAAAATGGTTTTGCAAAATCTGCCTACTGTGTGCAGTTGAAGACATGATTCAATGTATGATGTGTAAAGCCTGGGTTCATGTAGATTGTGCTTGCGTTAAGAAAACTATTAAGAAGTATTTATGTCCTCAATGCAAATAa
- Protein Sequence
- MATKRKYYAWNEVSMNLAIESVRNNKAGLNEASRMYGVPKATLKRRLDGVNRKAKEYVQIVGSEGDLPSELETELCQHILEMESSLYGVTPFDIRQLAFELAEKNNIKNRFNKEKRIAEAACEKYNITEAQRIFNVDETGLSTVQRKTRKILALKGKRQVGAITSGERGTNTTAVCCANAAGNFIPPLIIFKRKRAKDELRDGAPPGAIFAFNPESGYINKDIFYLWLQHFIESVKPTPEKKVLPLLDGHASHTKNLKAITYAKQHGVVLLSFPAHTTHKMQPLDVSFFKPLSLYYIDETEKWLRQNPGRTVTMFQVSMLFGKAYSRAASVGTAASGFAKTGICPLNKDAFADYEFIVPEKENDEISPPIVLDLQDEIDPLTLNISLLEENLDLNFEFTINQISPGAKKVAQELRKRSKKAQSSLELTSTPYKTTLEQAIVRPSKPKKPKFSAKETAFSKNKITDEPEPSTSKDAKSVNIEKWFCKICLLCAVEDMIQCMMCKAWVHVDCACVKKTIKKYLCPQCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00147298; iTF_01264417; iTF_00147299; iTF_01029196; iTF_01093967; iTF_01085105; iTF_00783378; iTF_00448979; iTF_00783379; iTF_00448980; iTF_01264436; iTF_00043421; iTF_01264413; iTF_01264414; iTF_00667323; iTF_00147296;
- 90% Identity
- -
- 80% Identity
- -