Mimp047345.1
Basic Information
- Insect
- Mythimna impura
- Gene Symbol
- -
- Assembly
- GCA_905147345.1
- Location
- LR990364.1:369802-418355[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.43 67 6.0 0.6 1 23 531 554 531 554 0.95 2 11 0.6 95 5.5 0.8 1 23 562 584 562 584 0.94 3 11 0.00034 0.053 15.8 1.4 1 20 617 636 617 638 0.94 4 11 0.0083 1.3 11.4 1.0 2 21 645 664 645 665 0.92 5 11 0.00028 0.044 16.0 0.6 2 23 681 702 680 702 0.94 6 11 0.00083 0.13 14.5 0.3 1 23 707 729 707 729 0.97 7 11 0.043 6.7 9.1 4.8 1 21 738 758 738 763 0.93 8 11 4.3e-05 0.0068 18.6 2.3 1 23 771 794 771 794 0.93 9 11 0.0089 1.4 11.3 0.4 1 23 800 823 800 823 0.94 10 11 0.03 4.8 9.6 0.3 3 19 836 852 834 853 0.89 11 11 0.062 9.8 8.6 0.9 1 23 866 889 866 889 0.97
Sequence Information
- Coding Sequence
- atgaaagaaattaacataaatatagAAGGTTATAACGTGAACGGGATATGTGTTGGCTGTTTGAACTATAATCGTCGTATGTTTTATCATGCTAGCGTGAAAGAATGTTTTCGTTTGCTGGGGAATATCGACGTTCCAGATGGCTTAGAAGTCCAGGTGTGCTGGGAATGCCTGGGCCGCGTCAAATCTGCTATCAGCTTCAAGGAGCAAATGCTAAAGTCGTACGACTTCCTTATCCAATATTCTAGAGAGCACACATTCCTGGACTCTCCAAACGACTTCAACCCTCACGCGACTGTCAACATAGAACAGACTGATGTGGAATGTTACGAATGTACACCAGAGACTGATGCCGTAGAGGATGAGAAGGACGCAGAGGTCAAGGCGGAGGAGGAGATCGAGGATAAGTATTCATTTGAGGTGGCCGTTAAAGAGGAAACATTCGACGACCAGTACTTCCAGGATATACCAGCAGTTGACAATGACGTCACATCAGATGAAGACGTACAACTTTCTAAGCTGAAAGAGAAAGAAACTGAAAAAGTCAAGAAGAAGAGAAAAAGCGAGTTGAAGAGAGATAGGGAAAGAGATAGAATGCCAGCCAACAAAAAGCCGAGAAAGACGAACAGAGGTGTCTATGACATATCACAATTTGAGGCAGCATTTGAACAAATTATACAAGGTGTATCTGTACGAAAAGCCGCTAAAATGTTCGGCTTAACTCATGTCACActgcaaaaatacaaaaagaaacgtCTAGAAAATAATTATCCTGTCAAAATGGGATATGCGAGAAACAGTTTCTTTACTACGGAACAAgagaatctcctaacgatataCCTCAAAAGATATGCAGATGTATATCCCAGTCTATGTGTTAAATTGGTCAGAAAATACGCTAAAGAGTTTAGTGAGAAACTCGGAATGAAAACACCAAAACCTTGGCTAGAAAACGAAATGGCAGGTGTAGATTGGTACAAGAACTTTATGTACAGAAATAAGGGTTTAGATGATAAAGTTGCTAGAACAACTGCTAAAGAGAAAGTTAGAGTTTTCTACGACCGCTTATGGAAAACTTTGAGCCAATACAATTTTTCTGCCgataatatttattgtattgatGAAATCGGCGTTAACATTGAAGACTTTAGAGATAAAATTACTCTGATTACCACAGAAAATGTAATTTCATTGCACATGTCTCAAGTAAAGTTCGCATATGCAGCGAACGCTAAAGGCAATGCAATACCTCCATTATTTTTTATGCCACGAGAGAATAATGAAGATTCGAAGACAGACGTTGAAATCAAAACGGAAAATGACACAGAAATACCAAATGAAACTACGTTTATAAATTTTTTGAAAGACTGCATTGATTTAAAAAACTTACCTGATTGGACGGAAGATCCCAATTTCTTGGTAGACTCCCCAAAACGCcagaagacaaagaaggaaaaaaGTCCCGACAAGAAGAGCAGAAAGCTAAAGAACCTTCCAGAAGAACTGGTAGAATTGTATACTATGAGTAAAGAGGAAATGTGGGGGATCAGGATCGAGGATCTGAACAGTAAGGAGTTCCAGAAGCTGAAGTACAGGTGTGATGATTGCATTATTGCCTTCAATACAGAGAAACTGATGCATGACCATCTGAATGGGAAACATCAACCGAAAAGTGAAGACTGCCATCAATGCTCAATATGCCAAGCCTACTTCCTCACAAAGGACAACGTCTCCGCTCACAAAGCGCTACATCTACAAGCGTACAGATGCAGACAGTGTAGTTTCAACACTACGCTCAAGAGACGCATGTTGAAACACGTCGGTTCCCACGCGCCGACTGGGGATGCGCATGTGTGTAGCACTTGTAATACCAGCTTTagTACAAAATCGAAGCTAACCTACCACCGCGGCGTCTGCCGTCAAGAAAGGCCGCAGTGCGACTGTTGCGGAAAAGTTTTTGCCAACAAAATGACGCTTAAGTACCACTTGAAAATCTTGCCTCAGAATAAAGATGACAAGCCGAAAGAGAAACTCTATATACCCTGCAAGGGATGCGACAAAGTGTTCCACTCCAAGAAAAGTTACAGAGCACACGTCGTTATCCACGACGGCCTAACTTACCCATGCCCAATTTGCGGCAAACTGTTCCAATGGAAGCGCAACCTGGCGCGGCACTCGCGCAACCACCGCGAGCGCGAGCTGGGCAGCCTGCACGAGTGCCGCGCCTGCAGCAAGACCTTCGCCAGCAGGGACTGCTACAACAACCACATGCGGCTCAGCAAGAAGCACGTCTCGCAGGATACCTACCAACACGAATGTAACTACTGCGGTAAGAAATTTGCCACAAAATGGTGCCTGACTGACCACATAGACTGGGATCACTTGAAGAGAATCAAGTACCAATGTAGTTTCTGTTTTAAGgcattCAAAACGGCTAAGATATTGGTGGCTCACGTCAATAATATACATGAGGGGAAGAAGAAAGAAGCGGAGGGGGAACACCTTTGTGAAatatgtgggaaatcatacagGACAGTAAAACGCTTGAAGGGCCACGTGTGGGCGATGCACACGAAGCGTTCGAGCAGCAAGATCTACAAATGCAAGCTGTGCCCCGCCACCTTCATGTGGCAGACGAGCATCTACAAGCATATGAAGATGATGCACGATAATAACAAGAAGACTAAGcCGCCGCGCGCTGTCCAACCAGTGAAGAAAGAAGAGCCCTACCCAGGAATCGAACTGGCGAACCGTATGCAGTACTTCCAACAGAACATCGGCGGCAACTTAAACATAGTCCACATACAACCTTTGGGAATTACTCAGAATATtgtctaa
- Protein Sequence
- MKEININIEGYNVNGICVGCLNYNRRMFYHASVKECFRLLGNIDVPDGLEVQVCWECLGRVKSAISFKEQMLKSYDFLIQYSREHTFLDSPNDFNPHATVNIEQTDVECYECTPETDAVEDEKDAEVKAEEEIEDKYSFEVAVKEETFDDQYFQDIPAVDNDVTSDEDVQLSKLKEKETEKVKKKRKSELKRDRERDRMPANKKPRKTNRGVYDISQFEAAFEQIIQGVSVRKAAKMFGLTHVTLQKYKKKRLENNYPVKMGYARNSFFTTEQENLLTIYLKRYADVYPSLCVKLVRKYAKEFSEKLGMKTPKPWLENEMAGVDWYKNFMYRNKGLDDKVARTTAKEKVRVFYDRLWKTLSQYNFSADNIYCIDEIGVNIEDFRDKITLITTENVISLHMSQVKFAYAANAKGNAIPPLFFMPRENNEDSKTDVEIKTENDTEIPNETTFINFLKDCIDLKNLPDWTEDPNFLVDSPKRQKTKKEKSPDKKSRKLKNLPEELVELYTMSKEEMWGIRIEDLNSKEFQKLKYRCDDCIIAFNTEKLMHDHLNGKHQPKSEDCHQCSICQAYFLTKDNVSAHKALHLQAYRCRQCSFNTTLKRRMLKHVGSHAPTGDAHVCSTCNTSFSTKSKLTYHRGVCRQERPQCDCCGKVFANKMTLKYHLKILPQNKDDKPKEKLYIPCKGCDKVFHSKKSYRAHVVIHDGLTYPCPICGKLFQWKRNLARHSRNHRERELGSLHECRACSKTFASRDCYNNHMRLSKKHVSQDTYQHECNYCGKKFATKWCLTDHIDWDHLKRIKYQCSFCFKAFKTAKILVAHVNNIHEGKKKEAEGEHLCEICGKSYRTVKRLKGHVWAMHTKRSSSKIYKCKLCPATFMWQTSIYKHMKMMHDNNKKTKPPRAVQPVKKEEPYPGIELANRMQYFQQNIGGNLNIVHIQPLGITQNIV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01094841;
- 90% Identity
- iTF_01029199;
- 80% Identity
- iTF_01026065;