Mimp020295.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mythimna impura
Gene Symbol
-
Assembly
GCA_905147345.1
Location
LR990346.1:10500602-10512720[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 6.6e-05 0.01 18.0 2.2 1 23 80 102 80 102 0.97
2 20 0.0034 0.54 12.6 0.6 1 20 108 127 108 130 0.94
3 20 1.7e-05 0.0027 19.8 5.6 1 23 149 171 149 171 0.98
4 20 8e-05 0.013 17.7 4.1 1 23 177 199 177 199 0.99
5 20 3e-05 0.0048 19.1 5.3 1 23 205 227 205 227 0.97
6 20 6.9e-06 0.0011 21.1 7.4 1 23 233 255 233 255 0.97
7 20 5.9e-07 9.2e-05 24.4 2.9 1 23 261 283 261 283 0.97
8 20 8.3e-05 0.013 17.7 6.7 1 23 289 311 289 311 0.97
9 20 8.2e-05 0.013 17.7 6.5 1 23 317 339 317 339 0.97
10 20 4e-07 6.3e-05 25.0 1.9 1 23 345 367 345 367 0.98
11 20 7.9e-06 0.0012 20.9 7.7 1 23 373 395 373 395 0.98
12 20 0.00011 0.017 17.3 6.8 1 23 401 423 401 423 0.97
13 20 1.6e-06 0.00025 23.1 4.2 1 23 429 451 429 451 0.98
14 20 5.4e-06 0.00086 21.4 5.0 1 23 457 479 457 479 0.96
15 20 8.9e-06 0.0014 20.7 5.2 1 23 485 507 485 507 0.98
16 20 2.5e-06 0.00039 22.5 6.0 1 23 513 535 513 535 0.98
17 20 4.8e-05 0.0076 18.4 7.9 1 23 541 563 541 563 0.97
18 20 1e-05 0.0016 20.5 6.6 1 23 569 591 569 591 0.97
19 20 0.0006 0.094 15.0 0.3 1 23 598 620 598 620 0.96
20 20 0.26 40 6.7 4.9 1 23 632 654 632 654 0.99

Sequence Information

Coding Sequence
ATGGGTATGGAAGGTGCAGTTGTGAAGATATCGGCTGGCGCGTCAGAACACGACCTCCACGCGATGTACAAAGTCAATGTAGAAGATCTGTCACAACTCCTCGCATATCATGAAGTCTTTGGAAAATTAAACTCGGAAGGGCAGCAGCAACAAGCTAAGGTAATAAGTGAAGTGGAAGTCGAAGTTGAAGCCGGTACCAGTGCAGCTATGTCAGAAGCCGAATCCTCACCCGGCCATCACTCATGTGATATTTGCGGGAAAATATTCCAGTTCCGATACCAACTTATTGTTCATAGGCGTTATCACGGTGAAAGTAAACCATTTACGTGTCAAGTTTGCGGTTCCGCATTTGCAAATCCTGTCGAATTGTCCAGACATGGAAAGTGCCATCTTGCTGGCGACCCAAACGAAAGGCACGCTAAGAGGATGGCGCAAGATAAACCATATGCATGCACGACTTGCCACAAAACTTTCTCCCGCAAAGAACATTTGGATAATCACGTTCGAAGTCACACTGGGGAAACTCCTTACAGATGCGAATTCTGCGCAAAGACTTTCACCCGCAAAGAGCACATGGTCAACCATGTACGAAAACATACGGGCGAAACTCCGCACCGATGTGACATCTGCAAAAAGAGTTTCACGAGGAAAGAACACTTCATGAACCATGTTATGTGGCACACAGGTGAGACGCCGCACCATTGTACAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGCGATCTCACACGAACGATACTCCGTTCCGATGTGAACTGTGCGGCAAATCGTTTACGAGAAAGGAACACTTCACCAATCACATACTGTGGCATACGGGAGAAACTCCTCACCGTTGCGACTTCTGTTCAAAGACGTTCACTCGCAAGGAGCATCTCCTGAACCATGTTCGTCAGCACACGGGCGAGTCTCCTCACCGGTGCAACTTCTGCAGCAAGTCATTCACAAGGCGAGAACACCTCGTCAACCACGTACGACAACACACAGGGGAGACACCCTTCCAGTGCGGATACTGTCCTAAAGCGTTCACGAGGAAGGATCATCTTGTGAACCACGTCCGTCAGCATACAGGCGAATCCCCGCACAAGTGTTCGTACTGCACAAAGTCTTTCACTCGCAAGGAGCACCTGACGAATCACGTGCGACAACATACGGGCGAGTCCCCGCATCGATGTACTTTCTGCGCCAAGTCCTTCACCAGGAAGGAACACCTTACCAACCACGTCAGACAGCACACGGGAGAAACGCCACACAAGTGCACGTACTGCCCGCGGGCCTTCGCGCGCAAGGAGCACCTCAACAACCACATCCGCCAGCACACCGGCGTCACGCCGCACGCCTGCTCCTACTGCAGCAAAAGTTTCACCAGGAAGGAACATCTCGTTAATCATATTCGGCAACACACGGGCGAGACTCCGTTCAAGTGTACGTTCTGTTCAAAGTCGTTCTCTCGTAAGGAGCATCTCACGAACCACGTGAACCTTCACACAGGAGCAACGCCCCACAAATGTCCCTTCTGCACAAAAACATTTTCCAGGAAAGAACATTTGACCAACCATGTCAGGATTCACACGGGAGAGTCCCCGCACCGGTGCGACTTTTGCCAGAAGACGTTTACTCGCAAGGAGCATTTGACGAATCATTTGAAGCAGCACACCGGCGATACCGCACACGTCTGCAAGGTGTGCAACAAGCACTTCACCAGGAAAGAGCATCTTGTCACACACATGAGGGCGCACAGTTGTGGTGAGCGTCCATTCAGTTGCGGAGAGTGCGGTAAATCTTTCCCATTAAAAGGCAACCTACTGTTCCATGAACGATCGCACAACAAGAACAATGCCAATGCTGCCAATAAGCCGTACCGATGCGAAGTCTGCTCTAAAGAGTTCCTCTGCAAAGGCCATTTGGTTTCACATCGGCGCACACACGCGGAGTGGGCGGAAGGTGCCGCTACCGGCGAGGCGCCCGCTGAAACAGAAGACTGTACTGATAATAAGTGTATCAAAGTTGAGCCGGAACGAACTGAAAGGAAACATGAAGTCAgGACGTCAGTCGACACGAGACCAGCCGAAAATAATGTCGCACAAAGTCAACCAAACACAGCTACAGTTATGATAACTAATAATCAACAAGTACGGCCGGCGAACGTGAGCGCAGTGGGCGCGGTGAGCGGCGTGAGCGGCGTGGGCGCGGtgggcggcggcgcgggcgtgGCGGCCACGTTCGCGCAGCACCACGCCGGCGCCACCATCGCGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence
MGMEGAVVKISAGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNSEGQQQQAKVISEVEVEVEAGTSAAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPNERHAKRMAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTFCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFARKEHLNNHIRQHTGVTPHACSYCSKSFTRKEHLVNHIRQHTGETPFKCTFCSKSFSRKEHLTNHVNLHTGATPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDTAHVCKVCNKHFTRKEHLVTHMRAHSCGERPFSCGECGKSFPLKGNLLFHERSHNKNNANAANKPYRCEVCSKEFLCKGHLVSHRRTHAEWAEGAATGEAPAETEDCTDNKCIKVEPERTERKHEVRTSVDTRPAENNVAQSQPNTATVMITNNQQVRPANVSAVGAVSGVSGVGAVGGGAGVAATFAQHHAGATIAHHPVTVNY*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01095156;
90% Identity
iTF_01095156; iTF_01095148;
80% Identity
-