Mimp042269.1
Basic Information
- Insect
- Mythimna impura
- Gene Symbol
- -
- Assembly
- GCA_905147345.1
- Location
- LR990360.1:22763952-22765887[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-09 1.4e-06 29.7 0.0 1 38 18 56 18 61 0.91 2 2 8.9 3e+03 -0.2 0.2 12 21 496 505 495 506 0.92
Sequence Information
- Coding Sequence
- ATGGTTCGCACCTATAAAAAGACCGCGGGTACCCgcaattataaaaattacacaGAGGAGGCAATGGAAGAAGCAatagaaaaaattacaaatagcgAATTGTCTATAAATGCTGCTTCACTTCTTTATAAAATTCCGTTTGGGacactttataataaatataaaggatTACACGGAAGGACGCCTGGTGCCCAACCAGTTTTCATGCACAATGAAGAAATCGCAATATTACGTGCTGCGGCTACATGCGGTGATTGGGGTTTTCCTCTTACTTTGTTAGACCTTAGAATGTTTGCAAAGGCTTATTTAGATAAACAGGGGAAGACAGTAGAACGGTTTACAAATAACCTACCAGGTGTCGAATGGGCAATTAGCGTTCTGAAGCGCCATAAAAACGCCTATGGTCAAAGACTATCAACTAATATTAAAAGGTCTAGAGCGACTGTGGGCCGGGAATCACTAAATAGATATTTCGACAACCTTCACTCTGAGGTAGAAAATGTACCACCGTCTAATATATTCAACTATGACGAATCTAATATGGCCGACGATCCGGGGAAAAAAAGATGTGTATATAGAAGAGGAGTAAAATATCCTGAGAAAGTGATGAACTTTTCGAAGAGTTCTACTACAGTTATGATTTGTGGTTCTGCAGATGGCACATTATTGCCGCcatatattatttacaaaagtaCCCATCTTTATGATACATGGAAGGAAAGAGGTATTGTTGGTAAACCGTGCTGTGAAGAGCCATGTTGCAGCCGGGGATGCCGTTACAATAGAACAACTAGTGGATGGATTGATACACCAACATTTAGAGATTGGTTCATGACTTGTTTTCTACCTCATGCCAAAAGACTAGAAGGGAAAAAGGTGTTAATTGGTGATAATCTATCGTCTCATATTGACAACGATGTTATAACTACATGTGAAACAAATAACATCAGTTTTATATGTTTGGTGCCTAATTCAACCCATTTAACCCAGCCGCTTGACGTTGGCTTTTTTCGTCCGTTAAAAATAGCTTGGAGACAAACTCTTGAAGACTGGAAAAAAGCCAATTTACGAACTACATCTGTACCTAAGGAGTCCTTCCCACATTTGTTGAAAAAGGCAATCATGAATATGGACCGAAAACCACCAAAAAATGATAAAGACGCTTGTACGGAGTTGTCAGCTGTAAAAAGAAATTTGGTGAGCAGTTTTAAGGCTACTGGTATCGCTCCTCTTGATAGAAACAGGGTTTTGAGCAAATTGCCTCCTGAGTCACCTTCTCCTGAAATGGAAACTGTCATCCGAGATTCGTTAACAGAGTTTTTAAGAGAACAAAGATTTGGGAATGAATCACAGCCACCAAGGAAGAGGACAAGACTGCAAATTGAACCCGGTAAAAGTATCTCAACAGTAGATGAACAATCAAATCAAGAAGTTAATGTTGAGCTTGAACACACATTGGATCGAAATGATAGTCCTGATAGTCCTGTACAAACTGGAACAATGTCTATGCAACAATCGATGCAAAATCCTGTTATCAGCGAGCCATCTACAAGCTATCAAACTGGTCAAGAGGACAACAATCATGATATTACCGATTGCGATTCAGATACTGAAAATATAGTGCCAAATCACGCTAGAAATACTTTAAGCGATTTCACACAGCTTCCCACAATAGGACAATTTATTTTAGCAAAATTTGGATCACAGAAGGGGAAAAAGACATATCATTATGAAGTTCCCAAAGATGTATCAATCATTGAAGTAAGTGACATTATAACTTACCTTCCCAAACCGAAATACATTAACGAATGCTACTCGTTCCCAAATGACGTGATGATTAAAGagttatag
- Protein Sequence
- MVRTYKKTAGTRNYKNYTEEAMEEAIEKITNSELSINAASLLYKIPFGTLYNKYKGLHGRTPGAQPVFMHNEEIAILRAAATCGDWGFPLTLLDLRMFAKAYLDKQGKTVERFTNNLPGVEWAISVLKRHKNAYGQRLSTNIKRSRATVGRESLNRYFDNLHSEVENVPPSNIFNYDESNMADDPGKKRCVYRRGVKYPEKVMNFSKSSTTVMICGSADGTLLPPYIIYKSTHLYDTWKERGIVGKPCCEEPCCSRGCRYNRTTSGWIDTPTFRDWFMTCFLPHAKRLEGKKVLIGDNLSSHIDNDVITTCETNNISFICLVPNSTHLTQPLDVGFFRPLKIAWRQTLEDWKKANLRTTSVPKESFPHLLKKAIMNMDRKPPKNDKDACTELSAVKRNLVSSFKATGIAPLDRNRVLSKLPPESPSPEMETVIRDSLTEFLREQRFGNESQPPRKRTRLQIEPGKSISTVDEQSNQEVNVELEHTLDRNDSPDSPVQTGTMSMQQSMQNPVISEPSTSYQTGQEDNNHDITDCDSDTENIVPNHARNTLSDFTQLPTIGQFILAKFGSQKGKKTYHYEVPKDVSIIEVSDIITYLPKPKYINECYSFPNDVMIKEL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00745599;
- 90% Identity
- iTF_00771832;
- 80% Identity
- -