Mvar014665.1
Basic Information
- Insect
- Mylabris variabilis
- Gene Symbol
- gl
- Assembly
- GCA_037464815.1
- Location
- JAZBGW010021684.1:1-1268[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0039 13 5.9 0.2 10 44 6 41 2 45 0.87 2 4 0.00086 3 8.0 0.2 21 44 46 69 40 73 0.83 3 4 0.0014 4.8 7.3 0.1 21 51 74 104 66 105 0.82 4 4 4.5e-05 0.16 12.1 0.1 21 45 102 126 98 130 0.90
Sequence Information
- Coding Sequence
- AAGAGTTACGCCCGTCCCAGTACGCTGAAAACCCATCTGCGTACCCATTCCGGTGAAAAACCATACCGTTGTAttgattgtaataaatcattttcaCAAGCAGCCAATCTAACGGCCCATGTACGTACACATTCCGGTGAAAAGCCATTCCATTGTCCTGTTTGTGATAGGCGTTTCTCACAAAGCTCATCAGTAACGACGCACATGCGCACCCATTCCGGTGAACGTCCCTATCGTTGTCGTTTATGTAAAAAAGCTTTCTCCGATAGCAGTACATTAACGAAACATTTGCGCATACATAGCGGTGAAAAACCATACGAATGTAAATTGTGCTTGTTGAGATTTAGTCAAAGTGGCAATCTAAATCGGCATATGAGAGTACATGGTACTAATAATATGATACCGCCATGA
- Protein Sequence
- KSYARPSTLKTHLRTHSGEKPYRCIDCNKSFSQAANLTAHVRTHSGEKPFHCPVCDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYECKLCLLRFSQSGNLNRHMRVHGTNNMIPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01050879;
- 90% Identity
- iTF_01124055;
- 80% Identity
- iTF_01022461;