Basic Information

Insect: Mylabris variabilis
Gene Symbol: -
Assembly: GCA_037464815.1
Location: JAZBGW010000919.1:3616-6193[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.3 4.4e+03 -2.2 0.0 26 46 205 225 200 227 0.76

2 15 0.0045 16 5.7 0.0 21 49 228 256 225 260 0.85

3 15 0.21 7.2e+02 0.4 0.0 22 52 257 287 254 289 0.82

4 15 0.21 7.1e+02 0.4 0.1 21 43 284 306 273 310 0.81

5 15 0.0055 19 5.4 0.1 20 50 311 341 301 344 0.82

6 15 0.0081 28 4.9 0.0 22 52 365 395 358 397 0.85

7 15 0.16 5.5e+02 0.7 0.0 23 47 394 418 393 423 0.83

8 15 0.036 1.2e+02 2.8 0.0 21 46 420 445 412 452 0.84

9 15 0.53 1.8e+03 -0.9 0.0 21 44 448 471 441 475 0.83

10 15 0.52 1.8e+03 -0.9 0.0 22 45 499 522 494 524 0.84

11 15 0.00019 0.67 10.1 0.0 18 52 522 556 517 558 0.88

12 15 0.04 1.4e+02 2.7 0.0 21 47 581 607 577 612 0.79

13 15 0.041 1.4e+02 2.6 0.1 21 46 609 634 597 641 0.81

14 15 0.064 2.2e+02 2.0 0.1 21 48 637 664 633 670 0.77

15 15 0.02 70 3.6 0.0 20 45 664 689 657 693 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.3	4.4e+03	-2.2	0.0	26	46	205	225	200	227	0.76
2	15	0.0045	16	5.7	0.0	21	49	228	256	225	260	0.85
3	15	0.21	7.2e+02	0.4	0.0	22	52	257	287	254	289	0.82
4	15	0.21	7.1e+02	0.4	0.1	21	43	284	306	273	310	0.81
5	15	0.0055	19	5.4	0.1	20	50	311	341	301	344	0.82
6	15	0.0081	28	4.9	0.0	22	52	365	395	358	397	0.85
7	15	0.16	5.5e+02	0.7	0.0	23	47	394	418	393	423	0.83
8	15	0.036	1.2e+02	2.8	0.0	21	46	420	445	412	452	0.84
9	15	0.53	1.8e+03	-0.9	0.0	21	44	448	471	441	475	0.83
10	15	0.52	1.8e+03	-0.9	0.0	22	45	499	522	494	524	0.84
11	15	0.00019	0.67	10.1	0.0	18	52	522	556	517	558	0.88
12	15	0.04	1.4e+02	2.7	0.0	21	47	581	607	577	612	0.79
13	15	0.041	1.4e+02	2.6	0.1	21	46	609	634	597	641	0.81
14	15	0.064	2.2e+02	2.0	0.1	21	48	637	664	633	670	0.77
15	15	0.02	70	3.6	0.0	20	45	664	689	657	693	0.79

Sequence Information

Coding Sequence: ATGGATTTGTGTCGGCTGTGCCATTTAGAAACACCTCTAGGTATTtgtaaacatttatatttcaatCAAACTCCTAGTCCACAAATACCggatattgttgaaattttaacaggcttaaaattgTATGAAAGTGATCCATTCCCGAAGATTGCATGTACAGATTGTTATgagaaattaatgaatttctaCGATTTTCGTAATCTAATTATCCAAGTCGATTCTAGATTCCATCAAGAATTATATAacagtaatttaattaatcaatttaagaCTGAAGCAGAAGAGTCCGCACCTGAAGCTGaaGCTGGAAGTAGTAATGAAACTAGAGATGAACAAGAATCAGAACCATCAAATTCAATAACAGATGCACCAAATTCTGAGATTGAAAAGAATGAATCCAATGACGATCAAAATATTAAcggtgataataatgatgacgacgatattgatgatgatgaggctgatgatgatgacacCGATGAAAATACAACTTTTATTCAACCATGCAAAGTGGAAGTCGAGGATTATCAAGCTGGAAACCTACAAGATTCACCAtctgaaaaaaacaattatgcCACCAATacttTGATCCATAAAGATGAGAAATTACACCAATGCAATACTTGTGGTAAAACATTTTCGTTAGCATCGAATTTAAAGacacatttaaaaatacatacagGCGAGAAACCGCACCAGTGTAGTATCTGTTTTAAGAATTTCACATCGAGTACAACGTTAAAAGTACATTTTCGTATACATACCGGTGAGAAACCGTACCATTGTAGTACTTGCGGTAAGGATTTTTCAGTTAGAGAGAATCTAAAGAAACATATGCGAATTCATACTGGCGAGAAACCGTATCAGTGTGATATCTGTGGTAGAAGCTTTGCTGATAGTGTCACATTAAAATCACACAAAAGGACGCATACGGGCGAGAAGCCCTATCATTGTACGCTTTGCGGTAAGAATTTCACTGTAAAGAATAATTTACGATCACATTTACGAACGCATAGTTATGCTGCAAAAGctaatagtaataatgttTTACAAGATGAGGATTTGATTCAGCATTCAACAACACAGAACGGCGAAAAATTGTATGTTTGTACTGTTTGTAAAGAGAGTTATAAGGATGAGGATGCTTTAAAACGTCACCTACAATTGCATAGCGGCATAAAGCCGCATCAATGcaatatttgtttgaaaagTTTCACGTCTAGTGCGACACTAAAAGTACATTTTCGTATTCATACCGGTGAGAAACCGTACCATTGTAGTATATGCGGTAAAGATTTCTCGATTAGAGAGAATTTAAAGAAACATATGCGAACACACACCGGCGAGAAACCGTATCAATGTGATCTTTGCGGTAAGAGTTACACAAATAGTGGTTCATTAAAATCACATGTAAGAAAACACAATATCGATCCGGATAACGATTTCGATATCTTAGATAAGAATTATACTGTACAAGAATCACCGGACACTAatgagaaaatatttatttgcaaTATCTGTAATGATAGTTTTAAAGAGCAAATGTCACTGAAAGAACATTTACAATCGCACAGTGATGGGAAATATGTTTGTGAAATTTGCAGTAAAATCTTCACGAAAAGTAGTAATTTGTATACACATTTACGTTTACACAACGGTGATAAACCACATCCGTGCAGTATATGTAATCGACGATTTCCATCAAAATCACGTTTGAATATCCATCTAAAAGTACATACAGGCGAGAAACCGTTCTCTTGTGACATATGCAATGCACGTTTCTCAGTGAAAGGTTCATTAAAAGCTCATTTTCGTATACACAACGATGAGAAACCGTTCAGTTGTCATATCTGTAATAAAGGTTTTCGTGTTAAATGTGCCCTAACTGTACATTTACGGGCGCACAATGATGAAAAACCGTTCAGCTGTGATATTTGCAATAAAAGCTATCGCGTCAGAGCGATTTTAAATGAACATATGAAATCGCATACTAGCGAGAAACCGTTCGTTTGTGAAATTTGTAATAAGGGTTTCTTGCGCAAATGGTCGTtgaataaacatttaaaaacgCATACAGAACGAAATAAAGACGAAATAATTGTGGAACGAGGTTTCCTATAA
Protein Sequence: MDLCRLCHLETPLGICKHLYFNQTPSPQIPDIVEILTGLKLYESDPFPKIACTDCYEKLMNFYDFRNLIIQVDSRFHQELYNSNLINQFKTEAEESAPEAEAGSSNETRDEQESEPSNSITDAPNSEIEKNESNDDQNINGDNNDDDDIDDDEADDDDTDENTTFIQPCKVEVEDYQAGNLQDSPSEKNNYATNTLIHKDEKLHQCNTCGKTFSLASNLKTHLKIHTGEKPHQCSICFKNFTSSTTLKVHFRIHTGEKPYHCSTCGKDFSVRENLKKHMRIHTGEKPYQCDICGRSFADSVTLKSHKRTHTGEKPYHCTLCGKNFTVKNNLRSHLRTHSYAAKANSNNVLQDEDLIQHSTTQNGEKLYVCTVCKESYKDEDALKRHLQLHSGIKPHQCNICLKSFTSSATLKVHFRIHTGEKPYHCSICGKDFSIRENLKKHMRTHTGEKPYQCDLCGKSYTNSGSLKSHVRKHNIDPDNDFDILDKNYTVQESPDTNEKIFICNICNDSFKEQMSLKEHLQSHSDGKYVCEICSKIFTKSSNLYTHLRLHNGDKPHPCSICNRRFPSKSRLNIHLKVHTGEKPFSCDICNARFSVKGSLKAHFRIHNDEKPFSCHICNKGFRVKCALTVHLRAHNDEKPFSCDICNKSYRVRAILNEHMKSHTSEKPFVCEICNKGFLRKWSLNKHLKTHTERNKDEIIVERGFL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00929732;
90% Identity: iTF_01022391;
80% Identity: iTF_01022391;