Basic Information

Insect: Mylabris variabilis
Gene Symbol: su(Hw)
Assembly: GCA_037464815.1
Location: JAZBGW010000550.1:6681-9584[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0034 0.2 12.1 0.7 1 23 166 189 166 189 0.95

2 13 0.015 0.91 10.1 0.7 1 23 220 243 220 243 0.94

3 13 4.6e-06 0.00028 21.1 1.0 1 23 249 271 249 271 0.99

4 13 2.5e-05 0.0015 18.9 0.4 2 20 278 296 277 298 0.95

5 13 2e-05 0.0012 19.1 1.6 1 23 309 331 309 331 0.95

6 13 1.8e-05 0.0011 19.2 1.6 1 23 341 363 341 363 0.99

7 13 4.7e-06 0.00028 21.1 0.3 1 23 369 391 369 391 0.98

8 13 1.7e-06 0.0001 22.5 0.7 1 23 397 419 397 419 0.99

9 13 1.1e-05 0.00066 19.9 3.5 1 23 425 447 425 447 0.95

10 13 5.4e-05 0.0032 17.8 3.4 1 23 453 476 453 476 0.97

11 13 0.00022 0.013 15.9 2.7 2 20 483 501 482 504 0.93

12 13 4.2e-06 0.00025 21.3 0.5 1 23 510 532 510 532 0.97

13 13 2.3e-05 0.0014 18.9 3.3 2 23 539 561 538 561 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0034	0.2	12.1	0.7	1	23	166	189	166	189	0.95
2	13	0.015	0.91	10.1	0.7	1	23	220	243	220	243	0.94
3	13	4.6e-06	0.00028	21.1	1.0	1	23	249	271	249	271	0.99
4	13	2.5e-05	0.0015	18.9	0.4	2	20	278	296	277	298	0.95
5	13	2e-05	0.0012	19.1	1.6	1	23	309	331	309	331	0.95
6	13	1.8e-05	0.0011	19.2	1.6	1	23	341	363	341	363	0.99
7	13	4.7e-06	0.00028	21.1	0.3	1	23	369	391	369	391	0.98
8	13	1.7e-06	0.0001	22.5	0.7	1	23	397	419	397	419	0.99
9	13	1.1e-05	0.00066	19.9	3.5	1	23	425	447	425	447	0.95
10	13	5.4e-05	0.0032	17.8	3.4	1	23	453	476	453	476	0.97
11	13	0.00022	0.013	15.9	2.7	2	20	483	501	482	504	0.93
12	13	4.2e-06	0.00025	21.3	0.5	1	23	510	532	510	532	0.97
13	13	2.3e-05	0.0014	18.9	3.3	2	23	539	561	538	561	0.94

Sequence Information

Coding Sequence: ATGGAGGGGTCCGTTAGTATTAAAGATGAGATTGAAGATAGTAAAGATGCTGTTGTGTTACAAAATATGCCAATGGAAGGTGACGATATACCGGTAATATTCAGTGATTATATGGAAAATAATTCAGATGGGAATCTACAAATTAATAGCGTACAAGATGATGTTATACACACGTACATCATTGATGAGATACAATACGAAGAAACACAATCTGAATCACAGCCAGATAAAGAACAAAACGAGACCATCGAAATTAATCGAGTAGATGAAGAACATCAATCTAGatcaaataatgataatgatacaATGGAATTGGAAGAGTACGATGATGAAACATCAAATACATTGTTGGAAAATGGTGGCGgagaagatgatgatgaaaatgatgatgatgatgatgatgttgataatgatCAACATGACGACGATGATGAGGATTATGACGAAGATGCTGTGAATTCACAAGATACGGAAGATGACGACGATGAAGGTGCATACGAATGTGATCAATGTTTaggtaaatttaaaacatcAGCCGGTTTGAAACGGCATAAAACTGTAAATCATGCCGAGGAGGAAATTCAAGAGGATCCTTTAAGTTTTGAATTGTGTGCATGCTGTGGGGAACCCTTAGATTCAGCAcatatgagtgGTGATTTTAAATGTACGAAATGTGAAAAACTATTTGTTGCACAATTAAATTTGGATCGACATTTTAGTATTGAACATGCTGAGaaagatttttataaatgtgtTGAATGTAAAAAGGAATTTAAAGGGAAAGAACAATTACTTGAACATATGAAAATGCATCCGTTAACAAAGAATGTTAAATGTCCGGGATGTAGTCGAGAATTTACTAGAAAATATCATCTAGATCGTCATATTGCACAGACTGGATGTAATGGTGCTCcaagaaaacaatttttatgtcGAgTTTGTAATCGAGTATTCCACCGGAAAGATAATTTAGCTGATCATTTACGTGTACATGCTGGTCAAGTTAAGAAGAAAAAGACATTCAAATGTGAATATTGTAATAAAGAATTTCATGGTTCAgctttattaaatattcatgtTAGGACGCATACgggTGAGCGCCCATATCCCTGTGATTTGTGTCCGAAAAAATTCCCGTCTAGTGGCGCTATGAAGAAACATCGACGTATGCATACAGGAGAGAGACCTTATGTTTGTAAAGAGTGTGATAATCGATTTGCAGCAAAGGAAACTTTGAATCGTCATATGCGTACACATACCGGTGAAAAGCCCCATTCGTGTCAATTTTGTGGCAAATCGTTTATACAAGCTTCACAATTGCGTGCCCATATATTCCATCATACTGGAGAGAATGCCTATACATGTCCGCATTGTAATCGTGCATTTAATCGTAAATTACGTTTAACAACACATATTAAATATATGCATGAAGGTGCTGAACCAATGTCCTGTTCTGAATGTGACAAAACGTTTTTCAGAAAAGAAGATCTAGCCAGACATTATCTTTGTCATACCGGTGAAAGgcCATTTGCTTGCGATATTTGCCAGAAAACATTTGCTGTAAAATCATCAttgaaaattcataaattaacACACCGTAAAGAACCACCATGTAGTTGTGATACATGTGGTCGTGCATTTATCCGTCAAGATTGTTTAATGCGTCATATACGTGCCCGTCATCGTGATGTATTAGAAGATATAATGGCCAGTGCTGAAAAGAAacgtttacaacaacaattattaaatgctGCAACAGAAGCAGCATCAaagaatcaaaataatttaacagagAATATGGTATGGAATGAATTAACATTAACTGAATCaattaaagaattattaacaatattggTGGAAGAAGCATGTTTAAAAGATTTCGGTTTTCCCGATGCACCAGTTGATAAGATTTTAGACGGTGTAATAAGGAAATGCGGACATAAACCAGCGTCTGAAGAGGATTTCGATTATATTGGTCGTATGAGAGAGAAtgcaaaattgttatttactgttgttattgatgatgatgctgtAAAATCATTATTGAATAATCAGACTGTTGATGAAGTGATTGTGCATGTTTTGAGATTGGCTAAAGCTGATAAGAAATAG
Protein Sequence: MEGSVSIKDEIEDSKDAVVLQNMPMEGDDIPVIFSDYMENNSDGNLQINSVQDDVIHTYIIDEIQYEETQSESQPDKEQNETIEINRVDEEHQSRSNNDNDTMELEEYDDETSNTLLENGGGEDDDENDDDDDDVDNDQHDDDDEDYDEDAVNSQDTEDDDDEGAYECDQCLGKFKTSAGLKRHKTVNHAEEEIQEDPLSFELCACCGEPLDSAHMSGDFKCTKCEKLFVAQLNLDRHFSIEHAEKDFYKCVECKKEFKGKEQLLEHMKMHPLTKNVKCPGCSREFTRKYHLDRHIAQTGCNGAPRKQFLCRVCNRVFHRKDNLADHLRVHAGQVKKKKTFKCEYCNKEFHGSALLNIHVRTHTGERPYPCDLCPKKFPSSGAMKKHRRMHTGERPYVCKECDNRFAAKETLNRHMRTHTGEKPHSCQFCGKSFIQASQLRAHIFHHTGENAYTCPHCNRAFNRKLRLTTHIKYMHEGAEPMSCSECDKTFFRKEDLARHYLCHTGERPFACDICQKTFAVKSSLKIHKLTHRKEPPCSCDTCGRAFIRQDCLMRHIRARHRDVLEDIMASAEKKRLQQQLLNAATEAASKNQNNLTENMVWNELTLTESIKELLTILVEEACLKDFGFPDAPVDKILDGVIRKCGHKPASEEDFDYIGRMRENAKLLFTVVIDDDAVKSLLNNQTVDEVIVHVLRLAKADKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00929766;
90% Identity: iTF_00814560;
80% Identity: -