Mvar004320.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mylabris variabilis
Gene Symbol
PAXBP1
Assembly
GCA_037464815.1
Location
JAZBGW010001389.1:12925-15378[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.6e-30 2.4e-26 92.9 2.7 2 272 537 745 536 747 0.90

Sequence Information

Coding Sequence
ATGTCTTTATTTCGAAAaccaaagaaaaatattcaacgaCGTGTATTAGCAGAGAATAcagacgatgatgatgatggtggtggtgataaaCTGTTGGAAATACAAGAATCTGTGCCGGTGCAAAAGAacgaatcaaataaaaaaaaatcgaaacatCAGAAAGCCAAACAGACTTTATTAAGTTTCCAAACTGAAGAAGATGATGAAGGTGAAGTGTTTCAAATAAAGAAATCATCGCACAGTAAGAAAGTGATGAAGATGTACGAACGTGAACGACAGAAAAAGAGAGAATCGcatcaccaacaacaacaaaaagtagAGAAAGAAGAGAAGATTGTTAAAAGTAATGAAAATAAAGAGAAGAAAACCGAAATAATAACCGATGATTTAGTATTGGTTGTCAATTCGAATCATAAAACGCctcaacaagaacaacaagaaaaacaacaacaacaaccccTGATTCTAAGCGGCCGTGATGCTCTCTGCGCTGGTAAAAACGATCTATCATCCgaagacgaagaagaaaaTTCCACCGGTATACATAAATTCTCAAAACCGGATAATTTTAAACGCGTTCTAGAATCTGGTTATATACCAGATGCGGCAATGATACATGCAGCACGTAAACGACGTCAACGTGCCCGTGAAATGGGCGATTTTGTACCAATTGAAGACCAAGAAGAACCAGAGGATAAGGGACGTTTAATGCGtgacgatgataatgatggtaGTGATGATGAACGTATTGATATGGATGTGAATTTGGCTGTATTACGTGATCAAGAACGACGGCGGGAACAGTTCTTAGCTGCACAAGATTCCGATCAAGAGGTCGATGATGAATGGGAACATCAACAGATACGAAAAGGTGTTACTGGTGCTAGTAGTTTAGCACCATCCGAATTAATTTATTCTGAATActtgcaacaacaacaacaaccggaGATAAATCAAATCAATCCACAACAAGAACCGCAAATCCAAGCAATCGATCCAGGTGTCCCACGTACGCCTGAAATGATCGCCTGTAAATTACGCGAACATTATCAGAACGTGTGTAATTCACGTGAAACGAACAGTAAGAAACTGGAACAAATACACGAGGAAATGCAGCAAATCACCAATGATTTGGATGAGTTGAAAGCTAAAGCTCCAATTGCTGCGGAACGTTTCAAATTCTATCAAGAATTACGCGGTTATGTCACCGATCTAGTTGAGTGTTTAGATGAGAAAATTGCTGTTATAGAAAATTTGGAACAACGTGCAATGGAACAGTTGGCTAAACGTTCTGAATGGTTAATTGAACGACGTCGACAAGATGTACGCGATCAAGCTGAAGAGGCAACGAATCCAAAACAACAAACGCCAACAATTAAAAGTCCGGAAGATGAGGACAAGGTGCGTCGCGCCGCCGAACGTGAAGGTAGACGGACACGACGGCGACGAGCGCGTGAACTGTGCGATCAACCGAAACATGTTGAAGGCATGTCCAGTGATGATGAGGTCTCACAACAGGACTTATTGAATTTCGATAAAGAACGCGAACAAATCGACTTAGAAATACAACAAGTCTTCAATGATGTCGTTGAGgattattcaacaattgaaaatattttaatcaaatttgaaGAATGGCGCGATACGGATCTGACATCGTATAATGAAGCCTATGCTACGTTATGTTTACCGAAAATTATAAGTCCATTAATACGTTTAGATTTGATCTTTTGGGATCCGTTAAATGTTAGTGTTGATATAGAGAAACTAGATTGGTATCGTACTTTAGCTTTATACGGTTTACACAATAACGAAACGGAAACTAGTCTGGCTCAAGATCCCGATTTAAATCTATTACCGATAATTGTAGAGAAAGTAATCGTACCGAAATTAACACAATTAGTCGATAAATGTTGGGATCCGTTGTCAAATTCACAaacattacgtttaatcggCATTATTCAGAGGTATATCCGTAAATTCCCCACATTAAATCCGGTTAGTAAGACGTTGAATAATCTGTTTAATGCTATATTGCATAAGATGAAATTGTCGTTGGAACATGATGTGTTTATACCGTTAACACCGAAATTGATTGAGAGTCGGTCAATGTTCTTTCAACGACAATTTGCAAGcggtttaaaattattgaagaacaTCACCAGTTGGCAGGGCATTTTAAACGATAAAATCTTGAAAGAATTAGCGTTAAAATCGTTATTGAATCGTTATCTGTTGAGTGCTATTAAATTCTGTGTATTAACAGATGCTGTATCGAAAGTTAGTTTGATTAGTTTAATATTACCGAGGGCATGGTTACAAAATAGTACGCCTGAATTGGATATGTTCACCAATAATGTTATGAATCTATCACAACAGTTGGATAAGAATAATCCATTACATTTAGAAtcgattgaaattattaacaatattttgaaaactttgcgaaattaa
Protein Sequence
MSLFRKPKKNIQRRVLAENTDDDDDGGGDKLLEIQESVPVQKNESNKKKSKHQKAKQTLLSFQTEEDDEGEVFQIKKSSHSKKVMKMYERERQKKRESHHQQQQKVEKEEKIVKSNENKEKKTEIITDDLVLVVNSNHKTPQQEQQEKQQQQPLILSGRDALCAGKNDLSSEDEEENSTGIHKFSKPDNFKRVLESGYIPDAAMIHAARKRRQRAREMGDFVPIEDQEEPEDKGRLMRDDDNDGSDDERIDMDVNLAVLRDQERRREQFLAAQDSDQEVDDEWEHQQIRKGVTGASSLAPSELIYSEYLQQQQQPEINQINPQQEPQIQAIDPGVPRTPEMIACKLREHYQNVCNSRETNSKKLEQIHEEMQQITNDLDELKAKAPIAAERFKFYQELRGYVTDLVECLDEKIAVIENLEQRAMEQLAKRSEWLIERRRQDVRDQAEEATNPKQQTPTIKSPEDEDKVRRAAEREGRRTRRRRARELCDQPKHVEGMSSDDEVSQQDLLNFDKEREQIDLEIQQVFNDVVEDYSTIENILIKFEEWRDTDLTSYNEAYATLCLPKIISPLIRLDLIFWDPLNVSVDIEKLDWYRTLALYGLHNNETETSLAQDPDLNLLPIIVEKVIVPKLTQLVDKCWDPLSNSQTLRLIGIIQRYIRKFPTLNPVSKTLNNLFNAILHKMKLSLEHDVFIPLTPKLIESRSMFFQRQFASGLKLLKNITSWQGILNDKILKELALKSLLNRYLLSAIKFCVLTDAVSKVSLISLILPRAWLQNSTPELDMFTNNVMNLSQQLDKNNPLHLESIEIINNILKTLRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00929572;
90% Identity
iTF_00813714;
80% Identity
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