Ltri010464.1
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- PAXBP1
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010002675.1:4721-7177[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.78 5.5e+03 -3.7 0.5 59 100 42 83 34 91 0.73 2 2 3.8e-30 2.7e-26 92.4 2.4 2 272 538 746 537 748 0.89
Sequence Information
- Coding Sequence
- atgtCTCTGTTTCGAAAACCGAAAAAGAATATTCAACGACGTATATTAACTGAAActacagatgatgatgatgatggtggtggtggtgaaaaACCAATGGAAATACAAGAAACTAGtcaatcaatacaaaaaactgaatcaaacaaaaagaaatctaAACACCAAAAACCGAAACAGACTCTATTGAGTTTTGAAACTGAAGAAGATGAAGGTGAAGTATTCCAAATCAAAAAATCATCACACAGTAAAAAAGTGATGAAAATGTACGAACGTGAACGACAGAAAAAGAaggaattacaacaacaacaacaacaacaacaacaaataaaggtagaaaaagaagagaagaatggcagtaataataataataataatagtaatgataataaagataaaaaaactgaaattatcACTGATGATTTAGTATTAGTTGTCAATTCAAATCATAAAAcaccccaacaacaacaacaaccacaaataCTAAGTGGTCGTGATGCTCTATGTGCTGGTAAAAACGATTTATCCTcagaagacgaagaagaaaCAACCAGCATACATAAATTCTCAAAACCTGATAATTTTAAACGTGTTCTAGAATCCGGTTATATACCAGATGCTGCAATGATACATGCAGCACGTAAACGTCGTCAACGTGCCCGTGAAATGGGTGATTATCTACCAATTGAAGAACATGaagaaaatgaagataaaGGACGTTTGATacgtggtgatgatgatgataatgatggtagtGATGATGAACGTATCGATATGGATGTTAACCTAGCATTACGTGATAAAGAACGTCGTCGTGAACAATTTTTAGCAGCACAAGTTTCTGATGAAGAAGAAATCGATGATGAATGGGAACATCAACAAATTCGAAAAGGTGTAACAGGTGCTAGTAGTTTAGCACCAACTGAATTAATCTATAATGCGgaatttatacaacaaactGATATCAATCAAATAACACCACAATCACAGATACAAGTAATGGATCCGGGTGTACCACGTACACCGGAAATGATTGCTAGTAAATTACGGGAACATTATcaaaatgtttgtaattcaCGCGATACGAATACAGGGAAATTAGAAAAGATCCAAGAGGAAATCCAACAAATCACCAAAGATTTGGAAGATTTAAAAACGAAAGCACCGGTGGCAGCACAACGTTTCAAATTCTATCAAGAATTACGCGGTTATATGACGGATCTCGTTGAATGTTTAGATGAGAAAATCGGTATTATAACGAATTTAGAACAACGTGCTTTagaacaattatcaaaacgTTCTGAATGGTTGATAGAAAGACGTCGTCAAGATGTACGTGATCAAGCTGAAGAAGTTACAAATCtgaaacaaattacaacaattaaaaatccaGAAGATGAGGATAAAATACGTCGTGCTGCTGAACGTGAAGGTAGACGTACACGACGACGACGTGCACGTGAATTATGCAGTCAACCGAAACATGTTGAAGGTATGTCCAGTGATGATGAGATCTCCCAACAggatttattgaattttgataaagaacGTGAACAAATCGaattagaaattcaacaaGTATTCAATGATGTGGTTGAagattattcaacaattgagaatattttgataaaatttgaagaatGGCGCGATACAGATCTAACATCATATAATGAAGCTTATGCTACATTATGTTTACCGAAAGTGATAAATCCATTAGTACGTTTAGATTTAATCTTTTGGGATCCATTAAATGATTGTGttgatatagaaaaattagatTGGTATCGTACATTAGCATTGTACGGTTTACATAATAATGAAACTGAAACAACATTATCACAAGATCCCGATTTAAATCTATTACCGATTATTGTCGAAAAAGTGATAATACCGAAATTGACGAAATTAGTTGATAAATGTTGGGATCCTTTATCAAATTCACAAACATTACGTTTAATCGGTATTATACAAAGATATATAAGgaaatttccaacattaaATCCGAGTagtaaaacattaaataatttatttaatgcaattttacataaaatgaaattatcattagaaCACGACGTTTTTATACCGTTAACACCGAAATTGATTGAATGTCGTTCAATATTCTTCCAACGACAATTTGCAAGCggtttgaaattgttgaagaatatCACCAGTTGGCAAGGTATCTTAAACGATAAAATCTTGAAGGAGTTAgcattaaaatcattattgaatCGTTATTTGTTAAGCGCAAttaagttttgtttattaacagaTGCTGTATCGAAAGTTAGTTTAATTAGTTTGATATTACCGAGAGTATGGTTACAGAATAGTACACCAGAATTGGATATGTTTAGTAATAGTGTTATGAATTTATCACAACAGTTAGATAAGAATAATCCATTACATTTAGAATctattgatattattaataatattttgaaaactttacggaattaa
- Protein Sequence
- MSLFRKPKKNIQRRILTETTDDDDDGGGGEKPMEIQETSQSIQKTESNKKKSKHQKPKQTLLSFETEEDEGEVFQIKKSSHSKKVMKMYERERQKKKELQQQQQQQQQIKVEKEEKNGSNNNNNNSNDNKDKKTEIITDDLVLVVNSNHKTPQQQQQPQILSGRDALCAGKNDLSSEDEEETTSIHKFSKPDNFKRVLESGYIPDAAMIHAARKRRQRAREMGDYLPIEEHEENEDKGRLIRGDDDDNDGSDDERIDMDVNLALRDKERRREQFLAAQVSDEEEIDDEWEHQQIRKGVTGASSLAPTELIYNAEFIQQTDINQITPQSQIQVMDPGVPRTPEMIASKLREHYQNVCNSRDTNTGKLEKIQEEIQQITKDLEDLKTKAPVAAQRFKFYQELRGYMTDLVECLDEKIGIITNLEQRALEQLSKRSEWLIERRRQDVRDQAEEVTNLKQITTIKNPEDEDKIRRAAEREGRRTRRRRARELCSQPKHVEGMSSDDEISQQDLLNFDKEREQIELEIQQVFNDVVEDYSTIENILIKFEEWRDTDLTSYNEAYATLCLPKVINPLVRLDLIFWDPLNDCVDIEKLDWYRTLALYGLHNNETETTLSQDPDLNLLPIIVEKVIIPKLTKLVDKCWDPLSNSQTLRLIGIIQRYIRKFPTLNPSSKTLNNLFNAILHKMKLSLEHDVFIPLTPKLIECRSIFFQRQFASGLKLLKNITSWQGILNDKILKELALKSLLNRYLLSAIKFCLLTDAVSKVSLISLILPRVWLQNSTPELDMFSNSVMNLSQQLDKNNPLHLESIDIINNILKTLRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01022217; iTF_00813714; iTF_00841846; iTF_01366328; iTF_00987125; iTF_00814403;
- 90% Identity
- -
- 80% Identity
- -