Mmin024731.1
Basic Information
- Insect
- Mycalesis mineus
- Gene Symbol
- -
- Assembly
- GCA_034621355.1
- Location
- JAXAVZ010000166.1:694758-709124[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.052 7.8e+02 1.0 1.0 26 48 23 45 15 48 0.92 2 11 0.00054 8.1 7.4 0.0 26 46 108 128 99 132 0.87 3 11 0.00033 4.9 8.1 0.0 22 46 132 156 128 160 0.85 4 11 0.00031 4.7 8.1 0.0 22 46 160 184 156 190 0.86 5 11 0.00032 4.8 8.1 0.0 22 46 188 212 184 217 0.85 6 11 0.0099 1.5e+02 3.3 0.0 29 46 221 238 216 243 0.88 7 11 0.0073 1.1e+02 3.8 0.0 29 46 249 266 238 271 0.85 8 11 0.55 8.1e+03 -2.2 0.0 30 45 286 301 274 308 0.59 9 11 0.28 4.2e+03 -1.3 0.1 38 49 327 338 315 342 0.78 10 11 0.55 8.2e+03 -2.3 0.2 27 52 344 369 339 370 0.79 11 11 0.0019 28 5.6 0.2 21 48 396 423 389 427 0.86
Sequence Information
- Coding Sequence
- ATGCCGTACCATAGTGTCTTCCGTCGAAGCGTTTACCGCACGTACGGGAGGCATATGAAAagATACGAATGTGCGATCTGCCACAAGCGGGCCACTGACATCAAATCCATCCAGCAGCATCTACATACAAGACACCAGATATCGCTCAGGAAGTACAAGTGCAAGTGGTGTGGGAAGGTGTCCAAGTCCGTAGACACACATCGCTATCACTGCGACATGCACAAATCGCGCGTCCAATGCCCGCAGTGTGACAAGACCTTTAGCCACCGGGCCGGTCTCATGAATCACAGGCTAGCAGTTCACGAGGCTCAGAACCAGTTCCCTTGCACTCTCTGCGACAAAGTGTTCAGGTGGAAGACCAGTCTCAAGCGGCATTTGGAAAAACACAAGACTGAGAACCAGTTCCCTTGCACTCTCTGCGACAAAGTGTTCAGGTGGAAGACCAGTCTCAAGCGGCATTTGGAAAAACACAAGACTGAGAACCAGTTCCCTTGCACTCTCTGCGACAAAGTGTTCAGGTGGAAGACCAGTCTCAAGCGGCATTTGGAAAAACACAAGACTGAGAACCAGTTCCCTTGCACTCTCTGCGACAAAGTGTTCAGGTGGAAGACCAGTCTCAAGCGGCATTTGGAAAAACACAAGACTGAGAACCAGTTCACGCTCTGTGACAAAGTGTTCAGGTGGAAGACCAGTCTCAAGCGGCATTTGGAAAAACACAAGACTGAGAACCAGTTCCCTTTCACGCTCTGCGACAAAGTGTTCAGGTGGAAGACCAGTCTCAAGCGGCATTTGGAGAAACACAACACTGAGCAGGAAAGCAGCACGGTGCCCACAAACAAAGCGTACTGCGAGTCGTGTGACATCGGTTTTTCATCCGTCTGTTCGCTGCAGCGCCATCTCAGAAACAGCCTCAAACACGTCACCTACGACCAGCTCAAATTCATCTGCGATCACTGCGATCAGAGATACGTGGACAAGACCAAACTGCGAGACCATATAGAAGAGAAACATTTGTACAGAACCTTCGAGTGTCACATCTGCCATAAGcCGTCCAAGAACCGCGTAGGTCTGGAGCAGCACGTCCGCACGGTCCACATCGGGCGACCCAACACTAGGATATGCCACCATTGCGGGAAGGGATTTCCGaCCAATTTGCAGCTCGAGTCtcacatacgcacacacacagGTGAAAGACCGTTTATGTGTGAGTACTGTCCCGCTACGTTCTCGCAGCAGTCCAATCTATACAAGCACCATAGACAAGTACATTTAAACATGAAATCCAAGCGTTATCCATTATGTAAGAAAACGAAAGCTGACGGGAATCAAACCGCCGACCCTCAGCCACCATTCCCCATAGCGATAATGCAGTATATACCCGATAACGGATTTAGCTTTTAA
- Protein Sequence
- MPYHSVFRRSVYRTYGRHMKRYECAICHKRATDIKSIQQHLHTRHQISLRKYKCKWCGKVSKSVDTHRYHCDMHKSRVQCPQCDKTFSHRAGLMNHRLAVHEAQNQFPCTLCDKVFRWKTSLKRHLEKHKTENQFPCTLCDKVFRWKTSLKRHLEKHKTENQFPCTLCDKVFRWKTSLKRHLEKHKTENQFPCTLCDKVFRWKTSLKRHLEKHKTENQFTLCDKVFRWKTSLKRHLEKHKTENQFPFTLCDKVFRWKTSLKRHLEKHNTEQESSTVPTNKAYCESCDIGFSSVCSLQRHLRNSLKHVTYDQLKFICDHCDQRYVDKTKLRDHIEEKHLYRTFECHICHKPSKNRVGLEQHVRTVHIGRPNTRICHHCGKGFPTNLQLESHIRTHTGERPFMCEYCPATFSQQSNLYKHHRQVHLNMKSKRYPLCKKTKADGNQTADPQPPFPIAIMQYIPDNGFSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01021520;
- 90% Identity
- iTF_01021520;
- 80% Identity
- iTF_01021520;