Mnit027998.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Musotima nitidalis
Gene Symbol
clz9
Assembly
GCA_949126915.1
Location
OX421442.1:5506252-5508696[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.3e-10 8.6e-08 32.6 0.1 3 38 12 47 10 51 0.92

Sequence Information

Coding Sequence
ATGGAACCGCAGAAGCGCAAACAGTACACATCTGCTCGACTAGAAGCTGCGCTTCGAGCTATAAATGAAGGGACCAGCATATACGAAGCTTCAAAAACCTATGGCATACCAAGAACAACTCTGCGTGACaagagaaataataaatattcaaatgaaCATTGTGGAAAACAAACAGTTTTGACGAAGGACGAAGAAAAAAGACTAGTGGACTGGATTTTCTATCTCGGGAAGTCGGGTTTTCCTGTAACTAAAGATCAGTTGTTGGAAACAGTAGCAAAATTGGTGGAAAACTTAGATCGCTCTAATCCTTTTAAAGATGGTGTTCCTGATAAAGGATGGTTCCTCAAGTTTATGGCAAGACACCCTACCATTTCAAAGCGAATCACTCAGAATTTGCCTACAAGCCGTACAGTCATTACAGAGGAAGCTATAAAAGCATGGTTCAATCGCGTACACCGTTATTTTAAACAGAATAATCTTCTTGATATTTTGCAAGATCCTAGTCGAATCTTTAATTGCGATGAGACcggattttttttatgtcccAAAGGCAAACAGGTTCTCGTCCAAAAGGGCAGCAAGAAAGTGTATAGTAGAGTGGCCAACGACGAAAAGGAATGTTTAACAGTGCTAGTAAATGTTTCTGCAGATGCTGCAATAGCACCTCCCATGATCTTATATCCGTACAAACGTTTACCAAAAAACATTGTTCCAACAGTACCATCCGGTTGGGGGATCGGTCACACTGAGTCAGGATGGATGAATATGACCGCATTTTATGAGTACGTTACCAATTGTTTTTATCCTTGGCTTATTGATCATAACATACAATTACCTGTGGCTCTTTTTCTCGATGGTCACGCTTCTCATATATCACTCCCTTTGTCAGTTTTTTGCAAAGAAAAGGGAATAGTTCTTATAGCATTATTACCTAATGCGACACACGTACTCCAACCCTTAGACGTCGCTGTATTCAGACCTGTGAAAGGAACTTGGAGAACTGTAGTTCACGACTTTAGGGTTCAAAACAACTTTGCAAAATTAAGACGAATAGATTTTGCACCTCAAGTGGATATTTGCTTAAAAAAGACACTCGTTTCTCAAACAATTAAGAATGGATTCCAATGTTGTGGATTATATCCTTTTGGGCCTGATAACGTAAATTATGATAAACTTTTAACTAAAAGCGTTATTGGAACTAGTGAAGAAAGTGGGGACAATGCAGATGATAATAGTAGCCATCCGTCGAGATCCGTATCGGACAATGAGAGAAATGTCGACGATACAGAAAAGTTTATACAGCAGTTTGAACGTCGTTTATCACCTGAAGTTCTCTTAATGTTCCAAAGATCAGGATCATCATGGAATGGAGATGCGACTTACAGTAAATTATTTGAGTTTTGGAGGGATATTAATGCTACAGACCATACACTTTTACAACAAACTTTCGATGACAATTTAGAATTGGGTGATACGACGCTTGTCAACAATATTTGTGAAGATGAGACGTTGATTTATGAAGTCAGTGCAAGTGGACGTCTTGTTCCAAACACTTACCAAGAAAATGTGGGATTTGTTAACGTTTCTAATAATGTTTTAAGGTTTCCCATGGACGAATTGCTATCTCCAATTATATCAACAGAAACAAGTACGGTAACTTTATTGAGCACTCAGCCTGAATCGAATGTTTTAGAATATGTTAACGAGATATCCCCTAAAACAACTACTACTTTAACTGATTGCAACAGAGTGTTAAACAGTGAAGATCATAATGCAGGCACATCAACTCCTAAACAatctaataataactttatcgATGAACATCTGCCTTCAGTATCCGGAATCAATCAATTGAATAAAAATCATAGTGACacattatttcaaaattctAATCATTCAAAGTTTATACCAAAAGAACTCAATCTTACAACTCCTTTTAAAAATGCCCTATTTTTTCCTCAAGTTGAGACTAAACTTAATAAAAGAGTTTCCAAGAAAATGACACCCACTGTTGCAATATCAGACGAGTTCATGGCATACCAGAAAATAACAGAAGAGAAAAAAGCACAGgaagaagaaaaaagaaaattacggaaagaaaaattacaaaacagcAAAATGGAAAGAGAAAAGAAACAGGCAGATCTTAAGAAGGCCCCAAGAAAGAAACCAACAAGTTTAAGAAAACATAATACATCAAAGGCATCGGGAATAGGTTCTAATAAGGCGTCAAGTTCAGAATCTGAATCTGACTTAGTATCAATTCCACGACAAAATAAGGTGAAAAAGAATTCAATACGTTCAGGTCAAGATTTAACATCTAGAGTTCTTCCAAATACATCACCATCTGATACTGATGATTTACCAATACGTGTACCAAACACTATGTCGTACAAACGACAAATTGTTTTTCCATCTGACTCTGattctgataatattttttaa
Protein Sequence
MEPQKRKQYTSARLEAALRAINEGTSIYEASKTYGIPRTTLRDKRNNKYSNEHCGKQTVLTKDEEKRLVDWIFYLGKSGFPVTKDQLLETVAKLVENLDRSNPFKDGVPDKGWFLKFMARHPTISKRITQNLPTSRTVITEEAIKAWFNRVHRYFKQNNLLDILQDPSRIFNCDETGFFLCPKGKQVLVQKGSKKVYSRVANDEKECLTVLVNVSADAAIAPPMILYPYKRLPKNIVPTVPSGWGIGHTESGWMNMTAFYEYVTNCFYPWLIDHNIQLPVALFLDGHASHISLPLSVFCKEKGIVLIALLPNATHVLQPLDVAVFRPVKGTWRTVVHDFRVQNNFAKLRRIDFAPQVDICLKKTLVSQTIKNGFQCCGLYPFGPDNVNYDKLLTKSVIGTSEESGDNADDNSSHPSRSVSDNERNVDDTEKFIQQFERRLSPEVLLMFQRSGSSWNGDATYSKLFEFWRDINATDHTLLQQTFDDNLELGDTTLVNNICEDETLIYEVSASGRLVPNTYQENVGFVNVSNNVLRFPMDELLSPIISTETSTVTLLSTQPESNVLEYVNEISPKTTTTLTDCNRVLNSEDHNAGTSTPKQSNNNFIDEHLPSVSGINQLNKNHSDTLFQNSNHSKFIPKELNLTTPFKNALFFPQVETKLNKRVSKKMTPTVAISDEFMAYQKITEEKKAQEEEKRKLRKEKLQNSKMEREKKQADLKKAPRKKPTSLRKHNTSKASGIGSNKASSSESESDLVSIPRQNKVKKNSIRSGQDLTSRVLPNTSPSDTDDLPIRVPNTMSYKRQIVFPSDSDSDNIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00794350;
90% Identity
iTF_00794354;
80% Identity
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