Htar036055.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Herminia tarsipennalis
Gene Symbol
clz9
Assembly
GCA_945859575.2
Location
OX243859.1:7212050-7214488[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8e-10 9.9e-08 32.6 0.1 3 38 12 47 10 51 0.92

Sequence Information

Coding Sequence
ATGGAACCGCAGAAGCGCAAACAGTACACATCTGCTCGACTAGAAGCTGCGCTTCGAGCTATAAATGAAGGGACCAGCATATACGAAGCTTCAAAAACCTATGGCATACCAAGAACAACTCTGCGTGACAAGAGAAATAATAAATATTCAAATGAACATTGTGGAAAACAAACAGTTTTGACGAAGGACGAAGAAAAAAGACTAGTGGACTGGATTTTCTATCTCGGGAAGTCTGGTTTTCCTGTAACTAAAGATCAGTTGTTGGAAACAGTAGCAAAATTGGTGGAAAACTTAGATCGCTCTAATCCTTTTAAAGATGGTGTTCCTGGTAAAGGATGGTTCCTCAAGTTTATGGCAAGACACCCTACCATTTCAAAGCGAATCACTCAGAATTTGCCTACAAGCCGTACAGTCATTACAGAGGAAGCTATAAAAGCATGGTTCAATCGCGTACACCGTTATTTTGAACAGAATAATCTTCTTGATATTTTGCAAGATCCTAGTCGAATCTTTAATTGCGATGAGACCGGATTTTTTTTATGTCCCAAAGGCAAACAGGTTCTCGTCCAAAAGGGCAGCAAGAAAGTGTATAGTAGAGTGGCCAACGATGAAAAGGAATGTTTAACAGTGCTAGTAAATGTTTCTGCAGATGCTGCAATAGCACCTCCCATGATCTTATATCCGTACAAACGTTTACCAAAAAACATTGTTCCAACAGTACCATCCGGTTGGGGGATCGGTCACACTGAGTCAGGATGGATGAATATGACCGCATTTTATGAGTACGTTACCAATTGTTTTTATCCTTGGCTTATTGATCATAACATACCTGTGGCTCTTTTTCTCGATGGTCACGCTTCTCATATATCACTCCCTTTGTCAGTTTTTTGCAAAGAAAAGGGAATAGTTCTTATAGCATTATTACCTAATGCGACACACGTACTCCAACCCTTAGACGTCGCTGTATTCAGACCTGTGAAAGGAACTTGGAGAACTGTAGTTCACGACTTTAGGGTTCAAAACAACTTTGCAAAATTAAGACGAATAGATTTTGTACCTCAAGTGGATATTTGCTTAAAAAAGACACTCGTTTCTCAAACAATTAAGAATGGATTCCAATGTTGTGGATTATATCCTTTTGGGCCTGATAACGTAAATTATGATAAACTTTTAACTAAAAGCGTTATTGGAACTAGTGAAGAAAGTGGGGACAATGCAGATGATAATAGTAGCCATGCGTCGAGATCCGTATCGGACAATGAGAGAAGTGTCGACGATACAGAAAAGTTTAAACAGCAGTTTGAACGTCGTTTATCACCTGAAGTTCTCTTAATGTTCCAAAGATCAGGATCATCATGGAATGGAGATGCGACTTACAGTAAATTATTTGAGTTTTGGAGGGATATTAATGCTACAGACCATACACTTTTACAACAAACTTTCGATGACAATTTAGAATTGGATGATACGACGCTTGTCAACAATATTTGTGAAGATGAGACGTTGATTTATGAAGTCAGTGCAAGTGGACGTCTTGTTCCAAACACTTACCAAGAAAATGTGGCATTTGTTAACGTTTCTAATAATGTTTTAAGGTTTCCCATGGACGAATTGCTATCTCCAATTATATCAACAGAAACAAGTACGGTAACTTTATTGAGCACTCAGCCTGAATCGAATGTTTTAGAATATGTTAACGAGATATCCCCTAAAACAACTACTACTTTAACTGATTGCAACAGAGTGTTAAACAGTGAAGATCATAATGCAGGCACATCAACTCCTAAACAATCTAATAATAACTTTATCGATGAACATCTGCCTTCAGTATCCGGAATCAATCAATTGAATAAAAATCATAGTGACACATTATTTCAAAATTCTAATCATTCAAAGTTTATACCAAAAGAACTCAATCTTACAACTCCTTTTAAAAATGCCCTATTTTTTCCTCAAGTTGAGACTAAACTTAATAAAAGAGTTTCCAAGAAAATGACACCCACTGTTGCAATATCAGACGAGTTCATGGCATACCAGAAAATAACAGAAGAGAAAAAAGCACAGGAAGAAGAAAAAAGAAAATTACGGAAAGAAAAATTACAAAACAGCAAAATGGAAAGAGAAAAGAAACAGGCAGATCTTAAGAAGGCCCCAAGAAAGAAACCAACAAGTTTAAGAAAACATAATACATCAAAGGCATCGGGAATAGGTTCTAATAAGGCGTCAAGTTCAGAATCTGAATATGACTTAGTATCAATTCCACGACAAAATAAGGTGAAAAAGAATTCAATACGTTCAGGTCAAGATTTAACATCTAGAGTTCTTCCAAATACATCATCATCTGATACTGATGATTTACCAATACGTGTACCAAACACTATGTCGTACAAACGACAAATTGTTTTTCCATCTGACTCTGATTCTGATAATATTTTTTAA
Protein Sequence
MEPQKRKQYTSARLEAALRAINEGTSIYEASKTYGIPRTTLRDKRNNKYSNEHCGKQTVLTKDEEKRLVDWIFYLGKSGFPVTKDQLLETVAKLVENLDRSNPFKDGVPGKGWFLKFMARHPTISKRITQNLPTSRTVITEEAIKAWFNRVHRYFEQNNLLDILQDPSRIFNCDETGFFLCPKGKQVLVQKGSKKVYSRVANDEKECLTVLVNVSADAAIAPPMILYPYKRLPKNIVPTVPSGWGIGHTESGWMNMTAFYEYVTNCFYPWLIDHNIPVALFLDGHASHISLPLSVFCKEKGIVLIALLPNATHVLQPLDVAVFRPVKGTWRTVVHDFRVQNNFAKLRRIDFVPQVDICLKKTLVSQTIKNGFQCCGLYPFGPDNVNYDKLLTKSVIGTSEESGDNADDNSSHASRSVSDNERSVDDTEKFKQQFERRLSPEVLLMFQRSGSSWNGDATYSKLFEFWRDINATDHTLLQQTFDDNLELDDTTLVNNICEDETLIYEVSASGRLVPNTYQENVAFVNVSNNVLRFPMDELLSPIISTETSTVTLLSTQPESNVLEYVNEISPKTTTTLTDCNRVLNSEDHNAGTSTPKQSNNNFIDEHLPSVSGINQLNKNHSDTLFQNSNHSKFIPKELNLTTPFKNALFFPQVETKLNKRVSKKMTPTVAISDEFMAYQKITEEKKAQEEEKRKLRKEKLQNSKMEREKKQADLKKAPRKKPTSLRKHNTSKASGIGSNKASSSESEYDLVSIPRQNKVKKNSIRSGQDLTSRVLPNTSSSDTDDLPIRVPNTMSYKRQIVFPSDSDSDNIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00667348;
90% Identity
iTF_00794350; iTF_01020186; iTF_01020187; iTF_00794347; iTF_01020188;
80% Identity
-