Mdei007229.1
Basic Information
- Insect
- Morpho deidamia
- Gene Symbol
- PAX6
- Assembly
- GCA_029101505.1
- Location
- JAPJRL010000009.1:5622072-5632895[-]
Transcription Factor Domain
- TF Family
- PAX
- Domain
- PAX domain
- PFAM
- PF00292
- TF Group
- Helix-turn-helix
- Description
- The paired domain, a ~126 amino acid DNA-binding domain, is found in eukaryotic transcription regulatory proteins involved in embryogenesis. Initially identified in Drosophila’s paired (prd) protein, it typically resides in the N-terminal region and may be followed by an octapeptide, a homeodomain, or a Pro-Ser-Thr-rich C terminus. Paired domain proteins act as transcription repressors or activators, with DNA-binding specificity mediated by three subdomains. Crystal structures reveal a bipartite DNA-binding paired domain: an N-terminal subdomain (PAI) and a C-terminal subdomain (RED), linked by a flexible linker. Both subdomains contain a helix-turn-helix motif that binds DNA's major groove, while the linker may bind the minor groove. Variations in domain usage across Pax proteins and isoforms determine sequence specificity.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.3e-71 2e-67 225.5 0.3 1 119 29 147 29 148 0.99
Sequence Information
- Coding Sequence
- ATGCTGCCAGCGCAGCAGCTAGCGCCCATTAGCCCCTGGCCACCAGACGGTATGCTGGACCGCATGGATGACCTGGCGCACAAAGGTCACAGCGGTGTTAACCAGCTCGGCGGGGTGTTTGTAGGAGGCAGACCGCTGCCAGACTCCACGAGGCAGAAGATCGTGGAGCTAGCGCACTCAGGAGCACGGCCGTGTGACATCAGCCGCATCCTGCAGGTCTCCAACGGCTGCGTGTCCAAGATACTGGGCAGGTACTACGAAACGGGTTCGATACGACCTCGAGCGATCGGCGGCTCGAAGCCTCGAGTTGCGACCGCAGAGGTCGTGAGCAAGATCGCGCAGTATAAACGTGAATGTCCTTCGATCTTCGCCTGGGAGATCCGAGACCGCCTGCTCAGCGAAGGAGTCTGCACCTCAGATAATATACCTAGTGTGAGTAcgctttaa
- Protein Sequence
- MLPAQQLAPISPWPPDGMLDRMDDLAHKGHSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATAEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTSDNIPSVSTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01491908;
- 90% Identity
- iTF_00205089; iTF_00035626; iTF_01117182; iTF_00657158; iTF_00656105; iTF_00289582; iTF_00457991; iTF_00986023; iTF_00198088; iTF_01027288; iTF_00642286; iTF_00947854; iTF_00779472; iTF_00660279; iTF_01042650; iTF_00839397; iTF_00433116; iTF_01078174;
- 80% Identity
- iTF_00457991;