Malt014986.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073428.1:21136828-21138830[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.011 1.4e+02 4.1 0.1 24 44 179 199 171 206 0.77 2 8 2.7e-07 0.0035 18.9 0.0 21 49 298 326 293 329 0.94 3 8 0.87 1.1e+04 -1.9 0.0 24 45 379 400 362 403 0.73 4 8 0.0021 27 6.4 0.0 21 44 404 427 396 432 0.90 5 8 0.11 1.5e+03 0.9 0.2 27 45 469 487 464 495 0.89 6 8 0.25 3.2e+03 -0.2 0.1 21 43 491 513 487 517 0.80 7 8 0.013 1.7e+02 3.9 0.1 11 48 508 546 503 548 0.82 8 8 7.1e-05 0.92 11.2 0.1 21 48 548 575 543 577 0.89
Sequence Information
- Coding Sequence
- atgaataataaatatatgaatatcTGTGTTAAtgacttttcaaaaatatgtcgaatttgtttattatcgaATGATTCTCAGTTTACACCAATGGAATCATTAgatttatatgaaaaagttaCTAATATTCAGataaaaCAAGATGACAAActtcctaaaaatatatgtgaGAGATGTGTGATGGAACTGAAAAGTGTGGCAtcttttatacaaaaatgtaaagaaatcgataaatttttaatgtccGTTTTAGAGAAATCTAAAGAAGGTAGTTTTAGCCCTATCCATGATTTACCTCATTATGAATCGGACGAATTTGACTCTCACTCGTGTGATCAACGCTCAATAAAACTTGAACATGGAGATTTATTTGATAATACCAAAGCAGTTATTAAATCTGAAAGTGATGCAAAAAACATACAGGTCAATTTTCATGATTCcgtatcaaaatattttcactgcGCAAATTGCGGAAAAGGGTTCAGTACCAAAAGGGAATTAGTAGTTCACATAAAAACCCATTCGGAAACAAAATCGTTTACTTGTCCGTTGTGTAATATGAAATTTAAGTTCAGGCAGTCTTTGCAAAGACATCGTATGATCCACAATATGATAAGGTCATATAACTGCGATATTTGTGGGAAAGGCTTTAAGAGGGCATTTTCGAGAAACAAGCATAGAAAAATTCATAATAGGGTAAAAATGCTTTTAGATACAGATATCGCAGAACTCAAGTATAGCTGTACTCAATGCGATAGAGTTCTAACTTCGCACTCAGCACTGAACAGTCATATGAAGACACATACAGGGGAGAAACCATATTCGTGCACGTATTGTGGAAAATGTTTTCCCTATGTTAGTAGCTTAACTGTTCACACTCGCCTGCATACAGGTGAGACACCTTTTGTCTGTCCAATATGCAACAAGGGTTATCGCAGTTCGACTAGTCTCAAAAAACATAAAGAAGTGAAACACTTTGAAATCGAAGACATCAAACAGGAAGATGAGAACAAAGAAGACGGAAACAGGGAATTGTTGAAGGATTCGAACAAAAGGGAATGTAAAATCTGCAACAAAATACTTCACAAACATGGATTCGGCACCCATATGAGAATCCACACAGTCGAAAAGAAGAAATTTGTGTGtacattttgcaataaaaatttccaGAAAAACTCTCATCTCGAGCGACACATTCGGATACATACAGGAGAAAGACCGTACATCTGCAAACTGTGCAATAAAACGTTCAAACAGGACGGAGACTTAAAAAGACATATTCTAACACACACAGGTGAAAAGCTGTTCCAATGCCAACACTGCGGGAAACAGTATTACACAAAGGGATCACTGGACACTCACATGACCGTCCATACGGGAATAAGACGGCCAGTTAATTACGAATGCAACATTTGTAAGAAATCATTCAGACAATGTACTCACTTCAAAACGCACATGAACTCGCACACAGGCGAAAGGCCTTACCTCTGTACGATCTGTGGGAAGTCTTTTACCGCAAGCGGAACCTTAAAAGTGCACACTCGGATTCATACGGGTGAGACTCCATTTGTTTGTTCCCATTGCAATAAAGGGTACAATAATTCGAGCAGTTTGAAAAGGCATGTCATGAGGAATCATACCGGAGAGAAACCCTATATATGTATGATTTGCAACAAAGGGTTTCATGACTCTACTAATTTAAAGAGGCATATAAAACGTGTACACTCTGTCGTAGAGATCAAGAAAGATAATGAAGCTACAGGGGCAACCAAATCTGAActgatataa
- Protein Sequence
- MNNKYMNICVNDFSKICRICLLSNDSQFTPMESLDLYEKVTNIQIKQDDKLPKNICERCVMELKSVASFIQKCKEIDKFLMSVLEKSKEGSFSPIHDLPHYESDEFDSHSCDQRSIKLEHGDLFDNTKAVIKSESDAKNIQVNFHDSVSKYFHCANCGKGFSTKRELVVHIKTHSETKSFTCPLCNMKFKFRQSLQRHRMIHNMIRSYNCDICGKGFKRAFSRNKHRKIHNRVKMLLDTDIAELKYSCTQCDRVLTSHSALNSHMKTHTGEKPYSCTYCGKCFPYVSSLTVHTRLHTGETPFVCPICNKGYRSSTSLKKHKEVKHFEIEDIKQEDENKEDGNRELLKDSNKRECKICNKILHKHGFGTHMRIHTVEKKKFVCTFCNKNFQKNSHLERHIRIHTGERPYICKLCNKTFKQDGDLKRHILTHTGEKLFQCQHCGKQYYTKGSLDTHMTVHTGIRRPVNYECNICKKSFRQCTHFKTHMNSHTGERPYLCTICGKSFTASGTLKVHTRIHTGETPFVCSHCNKGYNNSSSLKRHVMRNHTGEKPYICMICNKGFHDSTNLKRHIKRVHSVVEIKKDNEATGATKSELI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01014840;
- 90% Identity
- iTF_01014840;
- 80% Identity
- iTF_01014840;