Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073428.1:21136828-21138830[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.9e-06 0.00028 22.6 1.3 1 23 152 174 152 174 0.98

2 14 5.1e-05 0.0037 19.1 2.4 1 23 180 202 180 202 0.98

3 14 4.2e-05 0.003 19.4 1.5 1 23 208 230 208 230 0.98

4 14 1.2e-05 0.00089 21.0 2.2 1 23 246 268 246 268 0.99

5 14 5.3e-06 0.00039 22.2 2.6 1 23 274 296 274 296 0.98

6 14 1.4e-05 0.001 20.8 0.9 1 23 302 325 302 325 0.95

7 14 0.46 34 6.6 3.8 2 23 353 373 353 373 0.97

8 14 7.3e-06 0.00053 21.8 3.9 1 23 380 402 380 402 0.98

9 14 1.2e-06 9e-05 24.2 1.1 1 23 408 430 408 430 0.98

10 14 4.9e-05 0.0035 19.2 2.8 1 23 436 458 436 458 0.98

11 14 3.5e-05 0.0026 19.6 8.4 1 23 467 489 467 489 0.99

12 14 4.4e-06 0.00032 22.4 0.3 1 23 495 517 495 517 0.96

13 14 8.9e-06 0.00065 21.5 3.0 1 23 523 546 523 546 0.97

14 14 9.8e-06 0.00071 21.3 2.0 1 23 552 575 552 575 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.9e-06	0.00028	22.6	1.3	1	23	152	174	152	174	0.98
2	14	5.1e-05	0.0037	19.1	2.4	1	23	180	202	180	202	0.98
3	14	4.2e-05	0.003	19.4	1.5	1	23	208	230	208	230	0.98
4	14	1.2e-05	0.00089	21.0	2.2	1	23	246	268	246	268	0.99
5	14	5.3e-06	0.00039	22.2	2.6	1	23	274	296	274	296	0.98
6	14	1.4e-05	0.001	20.8	0.9	1	23	302	325	302	325	0.95
7	14	0.46	34	6.6	3.8	2	23	353	373	353	373	0.97
8	14	7.3e-06	0.00053	21.8	3.9	1	23	380	402	380	402	0.98
9	14	1.2e-06	9e-05	24.2	1.1	1	23	408	430	408	430	0.98
10	14	4.9e-05	0.0035	19.2	2.8	1	23	436	458	436	458	0.98
11	14	3.5e-05	0.0026	19.6	8.4	1	23	467	489	467	489	0.99
12	14	4.4e-06	0.00032	22.4	0.3	1	23	495	517	495	517	0.96
13	14	8.9e-06	0.00065	21.5	3.0	1	23	523	546	523	546	0.97
14	14	9.8e-06	0.00071	21.3	2.0	1	23	552	575	552	575	0.97

Sequence Information

Coding Sequence: atgaataataaatatatgaatatcTGTGTTAAtgacttttcaaaaatatgtcgaatttgtttattatcgaATGATTCTCAGTTTACACCAATGGAATCATTAgatttatatgaaaaagttaCTAATATTCAGataaaaCAAGATGACAAActtcctaaaaatatatgtgaGAGATGTGTGATGGAACTGAAAAGTGTGGCAtcttttatacaaaaatgtaaagaaatcgataaatttttaatgtccGTTTTAGAGAAATCTAAAGAAGGTAGTTTTAGCCCTATCCATGATTTACCTCATTATGAATCGGACGAATTTGACTCTCACTCGTGTGATCAACGCTCAATAAAACTTGAACATGGAGATTTATTTGATAATACCAAAGCAGTTATTAAATCTGAAAGTGATGCAAAAAACATACAGGTCAATTTTCATGATTCcgtatcaaaatattttcactgcGCAAATTGCGGAAAAGGGTTCAGTACCAAAAGGGAATTAGTAGTTCACATAAAAACCCATTCGGAAACAAAATCGTTTACTTGTCCGTTGTGTAATATGAAATTTAAGTTCAGGCAGTCTTTGCAAAGACATCGTATGATCCACAATATGATAAGGTCATATAACTGCGATATTTGTGGGAAAGGCTTTAAGAGGGCATTTTCGAGAAACAAGCATAGAAAAATTCATAATAGGGTAAAAATGCTTTTAGATACAGATATCGCAGAACTCAAGTATAGCTGTACTCAATGCGATAGAGTTCTAACTTCGCACTCAGCACTGAACAGTCATATGAAGACACATACAGGGGAGAAACCATATTCGTGCACGTATTGTGGAAAATGTTTTCCCTATGTTAGTAGCTTAACTGTTCACACTCGCCTGCATACAGGTGAGACACCTTTTGTCTGTCCAATATGCAACAAGGGTTATCGCAGTTCGACTAGTCTCAAAAAACATAAAGAAGTGAAACACTTTGAAATCGAAGACATCAAACAGGAAGATGAGAACAAAGAAGACGGAAACAGGGAATTGTTGAAGGATTCGAACAAAAGGGAATGTAAAATCTGCAACAAAATACTTCACAAACATGGATTCGGCACCCATATGAGAATCCACACAGTCGAAAAGAAGAAATTTGTGTGtacattttgcaataaaaatttccaGAAAAACTCTCATCTCGAGCGACACATTCGGATACATACAGGAGAAAGACCGTACATCTGCAAACTGTGCAATAAAACGTTCAAACAGGACGGAGACTTAAAAAGACATATTCTAACACACACAGGTGAAAAGCTGTTCCAATGCCAACACTGCGGGAAACAGTATTACACAAAGGGATCACTGGACACTCACATGACCGTCCATACGGGAATAAGACGGCCAGTTAATTACGAATGCAACATTTGTAAGAAATCATTCAGACAATGTACTCACTTCAAAACGCACATGAACTCGCACACAGGCGAAAGGCCTTACCTCTGTACGATCTGTGGGAAGTCTTTTACCGCAAGCGGAACCTTAAAAGTGCACACTCGGATTCATACGGGTGAGACTCCATTTGTTTGTTCCCATTGCAATAAAGGGTACAATAATTCGAGCAGTTTGAAAAGGCATGTCATGAGGAATCATACCGGAGAGAAACCCTATATATGTATGATTTGCAACAAAGGGTTTCATGACTCTACTAATTTAAAGAGGCATATAAAACGTGTACACTCTGTCGTAGAGATCAAGAAAGATAATGAAGCTACAGGGGCAACCAAATCTGAActgatataa
Protein Sequence: MNNKYMNICVNDFSKICRICLLSNDSQFTPMESLDLYEKVTNIQIKQDDKLPKNICERCVMELKSVASFIQKCKEIDKFLMSVLEKSKEGSFSPIHDLPHYESDEFDSHSCDQRSIKLEHGDLFDNTKAVIKSESDAKNIQVNFHDSVSKYFHCANCGKGFSTKRELVVHIKTHSETKSFTCPLCNMKFKFRQSLQRHRMIHNMIRSYNCDICGKGFKRAFSRNKHRKIHNRVKMLLDTDIAELKYSCTQCDRVLTSHSALNSHMKTHTGEKPYSCTYCGKCFPYVSSLTVHTRLHTGETPFVCPICNKGYRSSTSLKKHKEVKHFEIEDIKQEDENKEDGNRELLKDSNKRECKICNKILHKHGFGTHMRIHTVEKKKFVCTFCNKNFQKNSHLERHIRIHTGERPYICKLCNKTFKQDGDLKRHILTHTGEKLFQCQHCGKQYYTKGSLDTHMTVHTGIRRPVNYECNICKKSFRQCTHFKTHMNSHTGERPYLCTICGKSFTASGTLKVHTRIHTGETPFVCSHCNKGYNNSSSLKRHVMRNHTGEKPYICMICNKGFHDSTNLKRHIKRVHSVVEIKKDNEATGATKSELI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01015483;
90% Identity: iTF_01015483;
80% Identity: iTF_01015483;