Mcic015397.1
Basic Information
- Insect
- Mochlonyx cinctipes
- Gene Symbol
- -
- Assembly
- GCA_001014845.1
- Location
- JXPH01009502.1:1-7077[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.065 2.2e+02 2.2 0.0 21 45 91 115 86 118 0.87 2 8 0.0065 22 5.4 0.6 21 45 119 143 115 151 0.87 3 8 0.016 54 4.2 0.0 22 49 211 237 207 242 0.85 4 8 0.0033 11 6.4 0.0 26 44 366 384 361 387 0.90 5 8 0.0056 19 5.7 0.1 20 44 546 570 520 575 0.85 6 8 0.0052 18 5.8 0.1 21 46 575 600 570 603 0.89 7 8 0.0049 17 5.8 0.0 21 45 603 627 599 635 0.85 8 8 0.47 1.6e+03 -0.5 0.2 27 48 636 657 628 659 0.88
Sequence Information
- Coding Sequence
- ATGGATGAAGAACCGACAAGCGTTGAGATTAAAGTGGAGccggatttttattttccggAGCTAGGAGGCAGGTATTTTGAATCGGATGGCGAAGACGAGGATCTACAGGACGAGGAGGACTCTTTGGATTATCTTACGGACAAAAATAAGGATGCTCTAATTGAAAAGTACACAGTGCCCTTGGCAGATGGACGGGGATATAATTGTAAAGTTTGTGCAAAACTTTTGAAGAGTTCAAGTCATATTTTGGGCCATATTCGGACCCACACTGGCGAGAAACCTTTCAAGTGTGACATTTGCGAAAAATCTTTCAGCGAGTCTTCAAGTTTGaagGTACACATCCGTGTCCACACTGGCGAAAAACCTTTTGAATGCGTCGTTTGTAAACGACGATTCACACAGTCCTGTAATCTCCAGTCTCACATCAAAAGATCGTTGCATTACCCAGGGCAAGCACCTAAAAGACAAGGAGAACCATCAGGaagagtttttcagaaactacTTCCGAAAATAGTCCTAAAACCGCCAATTAACCACCCAATAGGAATTCTTCCGTTCAAATGTTGCGTTTGTGAAGAACCATTTTTCGATCAGGACCTTCTAATGATTCACGAAGAGACACATGCGCCAGAAACCCcttttaaatgtaaatattgtttCTCAATGTTTTCCATGCTGAAGAATTTCAGAGCGcacataaaaatacatattggCAGGAATGGCGTACAAAATGAAACAGAAAATAAACCACAAGTGCAGCAAATGAGAAGAAATTTTCCAAATACCCTACAAGCAAGACCACAATTTCCTACAGACATGAAAAATGGCCTAGAATACAAGCCCGTGATCTCACAACTCCAACAACGGCTTCAAATGCTCTCAAATCAAAGACAAATTCAGATACGAGCGCCGATCCAAGCGCCGGCACCTCCGAAAGCAGAAGTTCCGGCATCAAATCAAAAGATTGTTGTAACGGAGAACACAGAAAGACCATATCAATGCCTTGAATGCAAACAAAACTTCCCCAAGAACGAACTTTATCATCACATGAAGGTCCATCTGCACCAGCAAAACATTTTCCAGAAGAAAAAATACGAATGTTCAGTTTGCCAAAAGGTATTTGGAAAGTCGTACAATCTAAAAAGACATTTCATGACGCACGGAGAGTCAACAAGTCcaatcccaccaccacaatctgTTGATCCTGTTCCAATTACGCCAGAAGTTGATTTGGTCCGGATACCGAAAGAGGCTCCTCCAAACCTTATTCCCATTAACAAAAGTGCAAGCACAAATGGGACAAGTAACAATTTTCTgcacaaaatattgaatttaaaaaatgtccaGCTAGTGGCTTCAACGTCGAGCCAGCCAGCCAAAAAGGcgccaattttaataaatattaacaCAGAAGAAGACGATTTGTCCCGTCCACATTCCCAAGCGTCCAGCAACGGGGATAGCAGTTCGAAAGAAGGCGGCTTCATCATCAGCTCTGTAGCTTCTGTTGACCGGAGTtacctaaaaaaattggaccaACTCTCCGCTGAGTTGGTGAGCAAGAAAAAGCCACCCGGTGTTGAAACAGCAGCTTCAGGAAAGATTGCGGTGGTTGATGTGAAGAAATTGCTACAACAAAATCCGAATCCGTTCGAATGTCCATTGTGTCATAAAGTTATGTCTGAGGCGTTCAGCTTAAAGGTGCATATGAGGACGCATACAGGTGAACGCCCCTTCAAATGTAAATTGTGTAACAAAAAGTTCTCCCAGTCGTGCAACCTCAACACCCATATGCGAATACACAGTGGCGAAAAGCCATTCACCTGTGTCGTTTGCTTTAAATCTTTCACAAGGTCAGCATCTTTAAATGGCCACATGGCATCTCATACGTACGGCAAGATAAAATGTGTTGAATGCCATCAAATATTCATAAACGCATACAATTACACGAGGCACATTGAACGAGCACACCCGGATTTTATGTCCAAAATACCAGAGTACAAGGAAAGAGCAATGAAAAGATTTTACGAAAATCAACAAAGAATGATAAATTCGAACAACAGTTCATCGTCGGAAGCTTCCAGCTTTTCATCGTTTTCGCAACTGTTAGCAAAGACGGTGAAACCAGATAAATTTGAACCTGTTTTACCGGTTTCGATGGTGCAATCCaagcaaattattaaaataaaaacagaaaataagacGGAAGAGATTAGTTCGAACTCAGCCAACGACAGTGATTACGATGAATCAGATTATAATGACAGTGATACTGACTGGCCGCCGCCAAGGAGCGTTACTCAGGCGAAAAAACAGAATCTTGATGATATTAGTATCAACAGAGTTAAAACTAGTACTAGGTCTACC
- Protein Sequence
- MDEEPTSVEIKVEPDFYFPELGGRYFESDGEDEDLQDEEDSLDYLTDKNKDALIEKYTVPLADGRGYNCKVCAKLLKSSSHILGHIRTHTGEKPFKCDICEKSFSESSSLKVHIRVHTGEKPFECVVCKRRFTQSCNLQSHIKRSLHYPGQAPKRQGEPSGRVFQKLLPKIVLKPPINHPIGILPFKCCVCEEPFFDQDLLMIHEETHAPETPFKCKYCFSMFSMLKNFRAHIKIHIGRNGVQNETENKPQVQQMRRNFPNTLQARPQFPTDMKNGLEYKPVISQLQQRLQMLSNQRQIQIRAPIQAPAPPKAEVPASNQKIVVTENTERPYQCLECKQNFPKNELYHHMKVHLHQQNIFQKKKYECSVCQKVFGKSYNLKRHFMTHGESTSPIPPPQSVDPVPITPEVDLVRIPKEAPPNLIPINKSASTNGTSNNFLHKILNLKNVQLVASTSSQPAKKAPILININTEEDDLSRPHSQASSNGDSSSKEGGFIISSVASVDRSYLKKLDQLSAELVSKKKPPGVETAASGKIAVVDVKKLLQQNPNPFECPLCHKVMSEAFSLKVHMRTHTGERPFKCKLCNKKFSQSCNLNTHMRIHSGEKPFTCVVCFKSFTRSASLNGHMASHTYGKIKCVECHQIFINAYNYTRHIERAHPDFMSKIPEYKERAMKRFYENQQRMINSNNSSSSEASSFSSFSQLLAKTVKPDKFEPVLPVSMVQSKQIIKIKTENKTEEISSNSANDSDYDESDYNDSDTDWPPPRSVTQAKKQNLDDISINRVKTSTRST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01011451;
- 90% Identity
- iTF_01011451;
- 80% Identity
- iTF_01011451;