Mlon029030.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Microvelia longipes
Gene Symbol
-
Assembly
GCA_018340805.1
Location
JACMZG010001911.1:20472811-20479386[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00069 0.084 14.5 6.0 1 23 104 126 104 127 0.96
2 18 0.00099 0.12 14.0 0.7 2 23 144 165 143 165 0.97
3 18 2.9e-06 0.00035 21.9 0.7 1 23 171 193 171 193 0.97
4 18 3.8e-05 0.0046 18.4 0.8 1 23 199 221 199 221 0.98
5 18 5e-05 0.0061 18.0 0.9 1 23 228 250 228 250 0.98
6 18 0.13 16 7.3 4.2 1 23 256 278 256 278 0.98
7 18 5.7e-07 6.9e-05 24.2 0.7 1 23 284 306 284 306 0.97
8 18 4.7e-07 5.8e-05 24.4 0.2 1 23 312 334 312 334 0.98
9 18 0.0065 0.79 11.4 0.5 3 23 343 363 342 363 0.95
10 18 1.2e-05 0.0015 20.0 1.2 1 23 430 452 430 452 0.98
11 18 0.0013 0.16 13.6 0.2 3 21 456 474 454 475 0.92
12 18 9.6e-06 0.0012 20.3 1.2 1 23 519 541 519 541 0.98
13 18 0.0066 0.8 11.4 0.7 1 23 547 569 547 569 0.98
14 18 3.3e-06 0.00041 21.7 0.4 1 23 575 597 575 597 0.99
15 18 0.0088 1.1 11.0 2.7 1 23 603 626 603 626 0.95
16 18 0.0008 0.098 14.3 0.3 2 23 630 652 629 652 0.96
17 18 1.6 1.9e+02 3.9 0.0 9 23 667 681 660 681 0.94
18 18 0.0069 0.84 11.3 0.1 1 20 749 768 749 771 0.93

Sequence Information

Coding Sequence
ATGGCGGATATTGAAACTGTTGTAGATGTTTCAACAATTAAAgaagagttaatattttttgaagaatATGTGCCATTAGGGTATCAAGAGGAAGAAGTAGTCGCAGAGCCCGACGGAGAAGTCGTTGTCGAACAAACTGTCGATAATGAAGAAGTTATTGAAGCTACAAACAGTATATTACCTCCTCAAGAAATTGACTTGCTGGATCCGAGCCAATGGTCCCATGAGGAAGTTGTCATTGACTCTGCAGGAACAtttattaaagaagaaattacAGATACCACCGAAGTTACAGAACAGTCTCTTGTTTATGAATGCTACAAATGTGCTAAGAGATTcaactttaaagataaattatttaaGCACATGAAACTTCATCATGCCCGAGGAGATGACGTAGTAGTAGAAAAGGATGGTAAAAGAATTTGGACTTGTACTCTCTGTGATAAAACATTCATATCAAGAAAAGGTTCAATCATTCATCAGAGAACTCATACTGGGGAAAGGCCCTACTCTTGCAATGTATGCCAGAAGAGGTTTATTGACAGTAGCACCTTGATGAAACATCAGGTTATACATCAAGCTGTTAGGCCTTTTAGTTGTCTAGTCTGTAGAAGAGGATTTAATCAAAAAGTTGCCTTACAGAGACATGAAAGAACACATGGTCAAATGCAGCCTACATTTAAATGCAAATATTGTCCTAAAACTTTCCTTGTATCCAGCAGTTTACAAGCTCATGAAAAAATACATTCAGGTATAAAGCCATACACTTGTCAATATTGTAGTAGTAGGTTCCACACCTCAACTGCTCAGAGACAGCATGAAAGGGTTCATACCAACGAAAGACCTTATCAGTGTAATTATTGCCCCAAGGCTTTCAAAGATAGCGGAACATTATTTAAACATCAAGTGATACACTCTGGTATTAAACCATTTGTCTGTCCTATCTGTTCTCAAGGATTCACTCAAAAAGTAGCTCTTAGAAAGCACATCAGGTCACATGTTTCgagaaataatgaaaatatctgTGATGTTTGTGAAACTCAATTTTTTAGTAAGGATGATCTCTGTGCTCATGTAGAAGAACATATTGAGCAACATCCCAACCTCTCTCATGTCAGATCTGTTGCTAGCTCTTCTCTTAAAGCTAAGCAAGAAATGCAAAAAGTTGAATTAATAAATGCTGAAGAAGTGTTGGCTCAAGCAACTACAGCTACTGGCGATCTCAGTGACTTAGCAACTCTTTGTGATGTTGCAATTTCTACTGCTGGAGACCTAGCTCACTCCTACCCCTGTCTCCACTGTGGAATGACTTTTAGGAGAAAGAAAAGTTTAGATGCTCATCTCAGCGTCCATAGAATGAACTGTAAGTATTGTGAGAGACCATTCACTGACAAAGCATCACTTGATGCTCATGAGAAGAGGctttgtaattttgtaaaccCTAACAATGGAGCCGGCATTGTGAGAGAAGACACTTCCTCTTCCCCTACCACTAATAACTCAAATGCATCACTTTTCGGCAGTGTTCCACCAAAAGTTCCTAAGCGATATTTTTACTGTGAAAGGTGTGATAAAACATTCAGCTCTAGGAATGGTTATATTATTCACATCAGAAGTCATACGGGAGAGAGGCCCTATCCTTGTCGTTGGTGTGAAAAAGCTTTTGGTGATTCTGCTACCAGGCATAAGCATGAAAGAATACACACTGGAGAACGTCCATTCAAATGCACAAGATGTCCCCGTGCCTTTAACCAGAGAGCTGCTTTAAGAGCCCACCAAATCACTCACACTGTGGATAGagcttttatttgtaaattctgTCCCAGCTCCTTTCCGTACTTTGCAACTCTGAAAAGACATCAACAAGCTTGTCACAGTCAGTTGGTCTGTCCAATATGTTCACAGTCTTATAATGATGGTAAGAAACTTCAAGAACATCTTAAAACTAAACACATTGGTGACCCTAATCTACAATGTATTCTGTGTGACTCGGGAGTATTTACAGATCCTGATGAATATTGTGATCACATGATTTGGCACAGTAAACAGCATCAAACAGGCACAAAGTTAAAGCCACCTAAACGCAGAAATAAGAGGTTGAGAACTAAGTCACCATCTCCTCAGCCTCCTGAGCTTGCCGATCTAGAACTTCCATCTAAAGAAGATGAAGAAGTTATAGCTGATGCTGCTGAAACTGTTTATGAGCAAGTTATTGAGGAATTCCCTATAATAGAAGGACAATTCTCATGTGATGTGTGTGGAATTCTTTATGACGATAAAGAACAACTTAAACTCCACATTCCTATTCACTTCTAA
Protein Sequence
MADIETVVDVSTIKEELIFFEEYVPLGYQEEEVVAEPDGEVVVEQTVDNEEVIEATNSILPPQEIDLLDPSQWSHEEVVIDSAGTFIKEEITDTTEVTEQSLVYECYKCAKRFNFKDKLFKHMKLHHARGDDVVVEKDGKRIWTCTLCDKTFISRKGSIIHQRTHTGERPYSCNVCQKRFIDSSTLMKHQVIHQAVRPFSCLVCRRGFNQKVALQRHERTHGQMQPTFKCKYCPKTFLVSSSLQAHEKIHSGIKPYTCQYCSSRFHTSTAQRQHERVHTNERPYQCNYCPKAFKDSGTLFKHQVIHSGIKPFVCPICSQGFTQKVALRKHIRSHVSRNNENICDVCETQFFSKDDLCAHVEEHIEQHPNLSHVRSVASSSLKAKQEMQKVELINAEEVLAQATTATGDLSDLATLCDVAISTAGDLAHSYPCLHCGMTFRRKKSLDAHLSVHRMNCKYCERPFTDKASLDAHEKRLCNFVNPNNGAGIVREDTSSSPTTNNSNASLFGSVPPKVPKRYFYCERCDKTFSSRNGYIIHIRSHTGERPYPCRWCEKAFGDSATRHKHERIHTGERPFKCTRCPRAFNQRAALRAHQITHTVDRAFICKFCPSSFPYFATLKRHQQACHSQLVCPICSQSYNDGKKLQEHLKTKHIGDPNLQCILCDSGVFTDPDEYCDHMIWHSKQHQTGTKLKPPKRRNKRLRTKSPSPQPPELADLELPSKEDEEVIADAAETVYEQVIEEFPIIEGQFSCDVCGILYDDKEQLKLHIPIHF*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00743012; iTF_00743957; iTF_00793031;
90% Identity
-
80% Identity
-