Gbue003795.1
Basic Information
- Insect
- Gerris buenoi
- Gene Symbol
- -
- Assembly
- GCA_001010745.2
- Location
- KZ651054.1:1391400-1403926[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00085 0.12 14.5 6.0 1 23 105 127 105 128 0.96 2 18 0.0012 0.17 14.0 0.7 2 23 145 166 144 166 0.97 3 18 3.5e-06 0.00048 22.0 0.7 1 23 172 194 172 194 0.97 4 18 4.6e-05 0.0063 18.4 0.8 1 23 200 222 200 222 0.98 5 18 6.2e-05 0.0084 18.1 0.9 1 23 229 251 229 251 0.98 6 18 0.062 8.4 8.6 4.2 1 23 257 279 257 279 0.98 7 18 6.9e-07 9.4e-05 24.2 0.7 1 23 285 307 285 307 0.97 8 18 5.8e-07 7.9e-05 24.4 0.2 1 23 313 335 313 335 0.98 9 18 0.0023 0.31 13.1 0.5 3 23 344 364 343 364 0.95 10 18 1.4e-05 0.0018 20.1 1.1 1 23 431 453 431 453 0.98 11 18 0.00047 0.063 15.3 0.1 3 21 457 475 455 476 0.92 12 18 1.2e-05 0.0017 20.3 1.2 1 23 512 534 512 534 0.98 13 18 0.0023 0.31 13.1 0.7 1 23 540 562 540 562 0.98 14 18 4.1e-06 0.00055 21.8 0.4 1 23 568 590 568 590 0.99 15 18 0.011 1.5 11.0 2.7 1 23 596 619 596 619 0.95 16 18 0.67 91 5.4 1.7 2 23 623 645 622 645 0.94 17 18 0.7 95 5.3 0.2 2 23 652 674 651 674 0.91 18 18 0.0088 1.2 11.3 0.1 1 20 738 757 738 760 0.93
Sequence Information
- Coding Sequence
- ATGGCGGATATCGAAACCGTTGTAGATGTTTCAACTATTAAAGAAGAGTTAATATTTTTCGAAGAATACGTGCCATTAGGATTGCAGGAGGAAGAAGTCGTTGCAGAGCCGTTGGAAGTTAGCGAGGTCATCGTCGAACAAACCATCGACAATGAAGAAGTTATCGAAGCTACCAACAGTATACTGCCATCATCCCAGGAGTTTGACCCTCTCGGTCAATGGTCCCACGAGGAAGTGGTTATTGATTCAACCGGTACATTTATTAAGGAAGAGATGGCTGAAATTACGGAAATTACCGAACAGACCTTAGTTTACGAATGCTACAAGTGTGCTAAAAGATTCAACTTCAAAGATAAACTATTTAaacacatGAAACTACACCATGCTAGGGGAGATGATGTAGTTGTGGAAAAAGACGGTAAGAGGATTTGGACCTGCACCTTGTGTGATAAGACTTTCATCTCAAGAAAAGGTTCCATAATTCATCAGAGAACTCATACAGGCGAGCGGCCCTATTCTTGCAATGTTTGCCAAAAACGGTTCATTGACAGCAGTACTCTGATGAAACATCAAGTGATTCACCAAGCTGTAAGACCCTTCAGCTGCCTTGTCTGTAGGAGAGGTTTTAATCAAAAGGTTGCTTTACAAAGACACGAGCGTACACATGGACAGATGCAGCCTACATTTAAGTGTAAATACTGTCCTAAAACTTTCCTGGTTTCCAGCAGCCTCCAGGCACATGAGAAGATACACTCGGGAATAAAGCCATACACTTGCCAGTACTGCAATAGCAGGTTTCACACATCGACAGCCCAGAGACAACATGAACGTGTTCACACTAATGAAAGGCCTTACCAATGCAATTACTGCCCCAAAGCATTTAAAgacagtggaactcttttcaaACACCAGGTCATACACTCTGGCATCAAACCTTTTGTCTGCCCTATTTGCTCTCAGGGCTTCACCCAAAAAGTTGCCCTAAGGAAACACATACGTTCCCATGTCTCAAGAAACAATGAAAACATTTGTGACGTTTGTGATACACAATTTTTTAGCAAGGACGATTTGTGTGCCCATGTGGAGGAGCACATTGAGCAACACCCAAATCTCTCCCATGTCAGGTCTGTTGCAAGTTCCTCCCTTAAGGCCAAGCAGGACATGCAGAAAGTGGATCTTATCAATGCTGATGAAGTACTGTCCTCCGCAACCACTGCCACTGGTGACCTAAGTGACTTGGCAACTCTCTGCGATGTTGCCATAAGTACTGCAGGAGATCTGGCCCATTCTTACCCATGTCTTCACTGCGGCATGAGTTTCAGGAGGAAAAAGAGTTTGGACGCCCACCTTAGTATTCACAGAATGAACTGCAAATACTGTGAAAGATCATTCCCTGACAGAGCCTCTTTGGAGGCCCATGAAAAGAGACTTTGTTCGGCAGTACATCCTCAGGCAAACTTTGTTGTCGAACCCTCTCCTCCATCTCCCACCCCTGTTTTTACGACCAGTCCTCCTAAAGTTCCTAAAAGGTACTTCTACTGCGATCGATGTGACAAAACATTCAGCTCCAGGAACGGCTATATAATCCACATTAGGAGTCACACAGGGGAACGTCCTTATCCCTGTCGCTGGTGTGATAAGGCTTTTGGAGATTCCGCTACCAGGCATAAACATGAGCGAATACATACTGGAGAACGGCCCTTCAAATGTACACGTTGTCCTAGAGCTTTTAACCAGAGGGCTGCTTTGAGAGCTCATCAAATCACTCACACCGTAGACAGAGCCTTTATATGCAAGTTTTGTCCCAGTTCTTTTCCTTATTTTGCTACGCTGAAGAGACATCAACAAGCCTGTCACAGTCAACTAGTGTGCCCAATCTGTTCTTCATCGTACCATGATGTCAAAAAACTTCATGAACATCTTAAAGCCAAACACATCGGGGATCCAAATCTGACCTGCAATCTTTGTGATTCTGGCATTTTCACTGATGCTGATGAGTACTGTGATCATATGATTTGGCATAGTAAACAACATCAAACTGGTACAAAGCTGAAACCACCTAAACGTAGGGGTAAACGCTCAAGAACCAAATCTCAATCGCCTCCTCCTCCTGAAATTATGGATATTGAGATAACACCAAAAGAGGAGGAAGTGGTTGCTGAGACTGTGTATGAACAGGTTATAGAGGAGTTTCCAATCATCGAAGGACAGTTCTCTTGTGATATGTGTGGCATTCTATATGATGACAAAGAGCAACTCAAGCTTCACATTCCCATCCACTTCTAA
- Protein Sequence
- MADIETVVDVSTIKEELIFFEEYVPLGLQEEEVVAEPLEVSEVIVEQTIDNEEVIEATNSILPSSQEFDPLGQWSHEEVVIDSTGTFIKEEMAEITEITEQTLVYECYKCAKRFNFKDKLFKHMKLHHARGDDVVVEKDGKRIWTCTLCDKTFISRKGSIIHQRTHTGERPYSCNVCQKRFIDSSTLMKHQVIHQAVRPFSCLVCRRGFNQKVALQRHERTHGQMQPTFKCKYCPKTFLVSSSLQAHEKIHSGIKPYTCQYCNSRFHTSTAQRQHERVHTNERPYQCNYCPKAFKDSGTLFKHQVIHSGIKPFVCPICSQGFTQKVALRKHIRSHVSRNNENICDVCDTQFFSKDDLCAHVEEHIEQHPNLSHVRSVASSSLKAKQDMQKVDLINADEVLSSATTATGDLSDLATLCDVAISTAGDLAHSYPCLHCGMSFRRKKSLDAHLSIHRMNCKYCERSFPDRASLEAHEKRLCSAVHPQANFVVEPSPPSPTPVFTTSPPKVPKRYFYCDRCDKTFSSRNGYIIHIRSHTGERPYPCRWCDKAFGDSATRHKHERIHTGERPFKCTRCPRAFNQRAALRAHQITHTVDRAFICKFCPSSFPYFATLKRHQQACHSQLVCPICSSSYHDVKKLHEHLKAKHIGDPNLTCNLCDSGIFTDADEYCDHMIWHSKQHQTGTKLKPPKRRGKRSRTKSQSPPPPEIMDIEITPKEEEVVAETVYEQVIEEFPIIEGQFSCDMCGILYDDKEQLKLHIPIHF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01009719;
- 90% Identity
- iTF_00743957;
- 80% Identity
- -