Basic Information

Insect: Hermatobates lingyangjiaoensis
Gene Symbol: -
Assembly: GCA_026182355.1
Location: JAPFBL010000252.1:608219-610096[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00031 0.14 14.6 0.9 2 23 22 43 21 43 0.97

2 17 1.3e-06 0.00059 22.1 0.5 1 23 49 71 49 71 0.97

3 17 9.1e-06 0.0042 19.4 0.9 1 23 77 99 77 99 0.98

4 17 1.9e-05 0.0088 18.4 0.9 1 23 106 128 106 128 0.98

5 17 0.049 23 7.6 4.2 1 23 134 156 134 156 0.98

6 17 2.1e-06 0.00099 21.4 0.5 1 23 162 184 162 184 0.95

7 17 1.8e-07 8.3e-05 24.7 0.2 1 23 190 212 190 212 0.98

8 17 0.0012 0.54 12.7 1.7 2 23 220 241 220 241 0.95

9 17 9.3e-06 0.0044 19.3 1.8 1 23 306 328 306 328 0.97

10 17 7.6e-05 0.036 16.5 0.1 2 22 331 351 330 351 0.93

11 17 5.6e-06 0.0026 20.0 1.7 1 23 388 410 388 410 0.98

12 17 0.00071 0.33 13.4 0.7 1 23 416 438 416 438 0.98

13 17 1.4e-06 0.00067 21.9 0.3 1 23 444 466 444 466 0.99

14 17 0.0033 1.5 11.3 2.7 1 23 472 495 472 495 0.95

15 17 0.00074 0.35 13.4 1.6 2 23 499 521 498 521 0.96

16 17 0.44 2.1e+02 4.6 0.2 3 23 529 550 527 550 0.88

17 17 0.0026 1.2 11.6 0.1 1 20 602 621 602 624 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00031	0.14	14.6	0.9	2	23	22	43	21	43	0.97
2	17	1.3e-06	0.00059	22.1	0.5	1	23	49	71	49	71	0.97
3	17	9.1e-06	0.0042	19.4	0.9	1	23	77	99	77	99	0.98
4	17	1.9e-05	0.0088	18.4	0.9	1	23	106	128	106	128	0.98
5	17	0.049	23	7.6	4.2	1	23	134	156	134	156	0.98
6	17	2.1e-06	0.00099	21.4	0.5	1	23	162	184	162	184	0.95
7	17	1.8e-07	8.3e-05	24.7	0.2	1	23	190	212	190	212	0.98
8	17	0.0012	0.54	12.7	1.7	2	23	220	241	220	241	0.95
9	17	9.3e-06	0.0044	19.3	1.8	1	23	306	328	306	328	0.97
10	17	7.6e-05	0.036	16.5	0.1	2	22	331	351	330	351	0.93
11	17	5.6e-06	0.0026	20.0	1.7	1	23	388	410	388	410	0.98
12	17	0.00071	0.33	13.4	0.7	1	23	416	438	416	438	0.98
13	17	1.4e-06	0.00067	21.9	0.3	1	23	444	466	444	466	0.99
14	17	0.0033	1.5	11.3	2.7	1	23	472	495	472	495	0.95
15	17	0.00074	0.35	13.4	1.6	2	23	499	521	498	521	0.96
16	17	0.44	2.1e+02	4.6	0.2	3	23	529	550	527	550	0.88
17	17	0.0026	1.2	11.6	0.1	1	20	602	621	602	624	0.93

Sequence Information

Coding Sequence: ATGAAATTACATCATGAAAGAGGAGACGACGTTATTATTGAGAAAGATGGAAAGAGAATTTGGACTTGCACTCAGTGTGATAAAACTTTCATATCTCGAAAAGGTTCCATCATACATCAAAGAACTCATACTGGGGAGCGGCCTTATTCATGCAATGTTTGTGAAAAAAGGTTTATTGACAGTAGTACTTTAATGAAGCACCAGGTTATTCATCAAGCTGTACGACCATTTAGTTGCATGATCTGTAGGAGAGGTTTTAATCAGAAAGTTGCTTTACAACGACATGAAAGAACACATGGACAAATGCAACCTACTTTCAAATGTAAATACTGTCCTAAAACATTTTTGGTTTCAAGTAGTCTGCAAGCGCATGAAAAAATACACTCTGGAATTAAGCCTTATACATGCCAATATTGCAGTAGTAGATTCCATACATCCACTGCTCAACGTCAGCATGAAAGAGTTCATACGAACGAGAGGCCTTACTTATGCAATTACTGTCCGAAAGCATTCAAGGACAGTGGTACTTTATTTAAACACCAAGTTATACATTCAGGTATTAAACCTTTCGTTTGTCCTATTTGTTCTCAAGGATTTACCCAGAAAGTTGCTTTGCGGAAGCACATTCGTTCTCATGTTACACGCAATAATGACAATACATGTGAAGTTTGTGATACCCAGTTCTTCAGTAAAGATGACTTATGTTCCCATGTTGAGCAGCATATTGAACAGCATCCCAATCTTTCACATGTTAGATCTGTTGCTAGTTCATCTTTGAAAGCCAAAATCCATAATGAGGAATTACAACAGCGGAGCCCTGATTCTCAAGAACAAGCTCAAGGTACTGGTGATCTGAGTGATTTAGCTACTCTGTGTGATGTTGCAATATCAACTGCTGGAGATCTAGCACACAGTTATCCTTGTTTACATTGCGGTATGAGCTTTAGACGTAAGAAGAGTCTTGACTCTCACTTATCGATTCACAGACTGAACTGTAAATATTGTGACAGGCCATTTGCTGATAAGCCATCTCTTGAAGCCCATGAGAGGAGGTTGTGTTCAGAAACTTCACCTCCAAGAGCTGTTGTAATACCAGATTCATCACCTAGACCTCCCACACCTCCGAGTAACTGCACTCCTGTAAAGAACCCTAAAAGGTTTTTTTATTGTGAGCGATGTGATAAAACTTTTAGTTCAAGGAATGGTTATATTATACATCAAAGAAGTCACACTGGTGAAAGACCATATCCATGTAGATGGTGTGATAAGGCTTTTGGTGATTCGGCTACTCGACATAAACATGAGAGAATACATACTGGGGAAAGGCCTTTTAAATGTTCACGATGCCCTCGTGCTTTCAATCAACGTGCAGCACTTAGGGCTCATCAAATCACACACACAGTTGACCGAGCATTCATATGTAAATTTTGTCCATCTTCTTTTCCTTATTTTGCAACTTTAAAGCGACATCAGCAAGCTTGTCACTCACAGTTAGTTTGTCCCATATGTTCATCTTCGTATAATGATCAAAAAAAGCTTCACGAGCATCTTAAAACAAAGCATATTGGAGATCCCAATTTAATGTGTAATCTCTGTGATTCTGGTATTTTCACTGATCCTGATGAGTATTGTGATCATATGGTGTGGCATAGTAGGCAGCATCAAACAGGAACTTTAATTAAACCACCTAAAAGAAGAAGTGTAAAGAAAACCAGAAAATCACCTTCACCAGAAGTGATAGTTCCTAAAGAGGAACCTGTATATGAAGAAGTTATTGAGGAATTTCCCATTATAGAAGGGCAATTTTCTTGTGATATGTGTGGCATCCTATACGATGACAAAGAGCAGCTAAAGTTACACATTCCTGTTCATTTTTAA
Protein Sequence: MKLHHERGDDVIIEKDGKRIWTCTQCDKTFISRKGSIIHQRTHTGERPYSCNVCEKRFIDSSTLMKHQVIHQAVRPFSCMICRRGFNQKVALQRHERTHGQMQPTFKCKYCPKTFLVSSSLQAHEKIHSGIKPYTCQYCSSRFHTSTAQRQHERVHTNERPYLCNYCPKAFKDSGTLFKHQVIHSGIKPFVCPICSQGFTQKVALRKHIRSHVTRNNDNTCEVCDTQFFSKDDLCSHVEQHIEQHPNLSHVRSVASSSLKAKIHNEELQQRSPDSQEQAQGTGDLSDLATLCDVAISTAGDLAHSYPCLHCGMSFRRKKSLDSHLSIHRLNCKYCDRPFADKPSLEAHERRLCSETSPPRAVVIPDSSPRPPTPPSNCTPVKNPKRFFYCERCDKTFSSRNGYIIHQRSHTGERPYPCRWCDKAFGDSATRHKHERIHTGERPFKCSRCPRAFNQRAALRAHQITHTVDRAFICKFCPSSFPYFATLKRHQQACHSQLVCPICSSSYNDQKKLHEHLKTKHIGDPNLMCNLCDSGIFTDPDEYCDHMVWHSRQHQTGTLIKPPKRRSVKKTRKSPSPEVIVPKEEPVYEEVIEEFPIIEGQFSCDMCGILYDDKEQLKLHIPVHF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01009719;
90% Identity: -
80% Identity: -