Mmed014086.1
Basic Information
- Insect
- Microplitis mediator
- Gene Symbol
- prdm10
- Assembly
- GCA_029852145.1
- Location
- CM056849.1:27306114-27309214[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4e-07 5.7e-05 24.3 2.9 1 23 594 616 594 616 0.98 2 10 0.0015 0.21 13.1 1.8 1 23 625 648 625 648 0.97 3 10 0.00027 0.038 15.4 1.1 1 23 665 687 665 687 0.98 4 10 0.0017 0.25 12.8 0.0 3 23 707 728 706 728 0.95 5 10 0.00046 0.065 14.6 3.1 1 23 762 784 762 784 0.97 6 10 1.1 1.6e+02 4.0 4.6 2 23 793 814 792 814 0.96 7 10 0.0013 0.19 13.2 0.3 1 23 821 843 821 843 0.98 8 10 0.00015 0.021 16.2 4.0 1 23 850 872 850 873 0.95 9 10 0.00093 0.13 13.7 2.4 1 23 878 900 878 900 0.98 10 10 2.4e-05 0.0034 18.7 4.1 1 23 906 929 906 929 0.96
Sequence Information
- Coding Sequence
- atgGATCCAAGGGGCCCTCAAAGAGCGGGGGCCCCTATAAACCCAACGACAATTACATCAGCAATATCAGATGTTAATTCAGCTGTTGACAAGTCACTGCTGGATACTGTTGTTGATGACAATTGGCATGGAGTTGGTAATAcagctaaaaataataaccgcCTGTTGTTCCTCACTGTTGAATATGTAGACGATCATCAGTCACGAGactattcaaaagtattttctcCGTACGAACAGGTGTCTTTTTATTCCCCGAGAGCTCCGTCACCTCTCTCGGACTTTGAGCACAGCAAAGTGAGCCCGCTGGACCCGAACATGAGTTCAACTGCAAGATATTCACCTACACCTGTACAACAGCTTCCATCTCTGGCATTTCCAAACTCCGTGGTAGTTCTTCCTGGTCCTCCTTCACCGCTTATTATTCCTAGTGACGGTCATGCTAGAgccaatattaataattatatttctaGTCACAATAATACTATTCAAAATGTAGCACAGTCGGGTGATAGTACAACAATTGATTTTGTCAATAATGAGGCTAATGGAGAAGCTCTAGTTACTAGTGTTAATGGAGAGTTAATTTTAATGCAAGGTACAAGTACTGAGTTGGAGTCAACCTCATCGTCTTCGTCCTCGGTGTCAGCTGACACTGCTGCTGCCGGACCGCTGATGCTGGCAGAAATTCCAGAGGCTGAGTTTGCATTGACGCGAGAATTTTTGGTGATGCAAGATGATGACCATTTGAATGTTGTTAATTCATTGCCCAATCAAAATTGTGAAATAAAACAAGAGCAGATTATGATCACTggtgataataatattattgataatcaTCAAACggaattattgaatttaaataatggagATGGAGTAATTTCTCAGGAACAAGTTTTAggaagaatattaaaaaataatattgaatgtaaaaaattgataaaaagtatTCCAGCTTCTGGTAAAGTAACattgaggaaaaataaaaaacaaattcgtaATAAAACGACTttagAATGCGAGGAGTGTATTTCAGCAGCTTGTTTGAAATCTGGTGAGTGTACTTGTCGAAATGTCCGCACAATTTCTGATCAACCAGTACCATCTCGAGCTGTTGCAACTTTACCAGGATCATATCTggcgataaataaattaccatcCGCTGTAGCTATTGGTGAACCAATAGGACAAAGTTATTATGGAGTATTTGCTAAACGTAATATTCGGCAACGCACTCAGTTTGGGCCTATCGAAGGTATACTGTGTCCTTACAACGGAgagtttcttaaaaataatggGCTACCTTTGCTCTATGAAACAAATGACGGGCAGCTACTAAAAGTTGACGTGTCAGACGAAAATACTTCAAACTGGATGCGGTTTGTTCGACCAGCTTTGACTTTCGATGAACAGAACTTAGTTATTTGTCAGCAGAgtgatggaattttttttcttaccacCCGGAATATTCTATCTAAAGAGGAATTGAAAGCAGGTCCAAGTTCTCAGTATGCTCTACGTCGCAATTTGACTGTTCTTCAGCCAGATTCATTGTTGAAAGACAAAGAAATCCATCAGGATGACAGTAATATTAATGGATGGCCGTATTTGGAGTGCAGCGAGCCATTCAAATCATCTGAAAAGTTATCAGAACCTTTAGATGCTCATCAAGGTAAGAGTGAAgtaactgaaaaatttgacagcgaacaaaataattcaaaattgtcatctgatgataataataagtcACTTAAAGTTGTTGATGGACAAACGGTCCTCTATTCCTGTTCTCAATGCCCAAAAGTATTTCCACGAAGTTATAGTTTGAAGCGTCATATGCACATGCATCTTGGCTCAAAAGCGCCTCAGAAGTATGAGTGTTCAACCTGCGGCGAGAGTTTTTTGCATCCTTACAACCGTAGCCGgcacataaaaatatttcacagCGACGAAACACGAGAGAAAGAAAATGCTCGTGAAAATTCCAGTGATTATAAATGTAAATCTTGTAATTtggcttttaaaaaattgtctttgTTGAATATTCATAAATTGATACACGAGCAAGATGTAAATAAAGAACACGATGGTTCTTCAACATCGTCATTGTCATCAGCATGTCCACAGTGTGGAGTTGCATTTAATGCTTGGTACGATTTAATAAATCACGTATCATCAAAACATGGCCGGATTACATTGCCTAAAGTAACTAGTTCATCTAaagcaaataataataataataatcaaaatcaGAATCAGAATCAGGTTTCAACACCGCCAATGTATAAATGTACAAAGTGCTATAAACGTTTTGCGACAAAGGTACGGCTCCAGCAACATTTTCTAGTCCATGGCGCTGAAGATCAAAAGCCACTGCCGTGTAATGTCTGTTGTAAAagatttatgaataattcagCACTCTCTTGTCACTTGAAAACTCACCGTCAGgataaacaattgtttgagTGTCCAATGTGCCGTAAATTGTTTAACCAAGTTCTCATGCTGAAAGAGCACATTGAAACACACAGAGGTGAGGATGGTATATTTAGTTGCCCTCACTGTCCGAGGACATTTACCAAGTACTCGGTTATAAGGAAACATATCAGAGCTCATCATTGTGAACGTAAACACAAATGTCAATTTTGTTCAAAACCATTCCCGACAATAGACAAATTACGTATGCATTTATTGCGTCACTCGGATCACAGGGAATTTCATTGTGCTAATTGTGGAAAGCAGTTTAAAcgtaaagataaattaaaagaacacATGACGAGAATGCACAATGCACAGAAAATAAAACGGGATCAAATTATAACacaaaatatcAGGGGAAAAAATTTGTACCAAAAGTTAATCCAACGGATTACaatcgttttatttataagtgcCATCAATGCCTAG
- Protein Sequence
- MDPRGPQRAGAPINPTTITSAISDVNSAVDKSLLDTVVDDNWHGVGNTAKNNNRLLFLTVEYVDDHQSRDYSKVFSPYEQVSFYSPRAPSPLSDFEHSKVSPLDPNMSSTARYSPTPVQQLPSLAFPNSVVVLPGPPSPLIIPSDGHARANINNYISSHNNTIQNVAQSGDSTTIDFVNNEANGEALVTSVNGELILMQGTSTELESTSSSSSSVSADTAAAGPLMLAEIPEAEFALTREFLVMQDDDHLNVVNSLPNQNCEIKQEQIMITGDNNIIDNHQTELLNLNNGDGVISQEQVLGRILKNNIECKKLIKSIPASGKVTLRKNKKQIRNKTTLECEECISAACLKSGECTCRNVRTISDQPVPSRAVATLPGSYLAINKLPSAVAIGEPIGQSYYGVFAKRNIRQRTQFGPIEGILCPYNGEFLKNNGLPLLYETNDGQLLKVDVSDENTSNWMRFVRPALTFDEQNLVICQQSDGIFFLTTRNILSKEELKAGPSSQYALRRNLTVLQPDSLLKDKEIHQDDSNINGWPYLECSEPFKSSEKLSEPLDAHQGKSEVTEKFDSEQNNSKLSSDDNNKSLKVVDGQTVLYSCSQCPKVFPRSYSLKRHMHMHLGSKAPQKYECSTCGESFLHPYNRSRHIKIFHSDETREKENARENSSDYKCKSCNLAFKKLSLLNIHKLIHEQDVNKEHDGSSTSSLSSACPQCGVAFNAWYDLINHVSSKHGRITLPKVTSSSKANNNNNNQNQNQNQVSTPPMYKCTKCYKRFATKVRLQQHFLVHGAEDQKPLPCNVCCKRFMNNSALSCHLKTHRQDKQLFECPMCRKLFNQVLMLKEHIETHRGEDGIFSCPHCPRTFTKYSVIRKHIRAHHCERKHKCQFCSKPFPTIDKLRMHLLRHSDHREFHCANCGKQFKRKDKLKEHMTRMHNAQKIKRDQIITQNIRGKNLYQKLIQRITIVLFISAINA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01004563; iTF_01005504;
- 90% Identity
- iTF_01004563; iTF_01005504;
- 80% Identity
- -