Mman002716.1
Basic Information
- Insect
- Microplitis manilae
- Gene Symbol
- prdm10
- Assembly
- GCA_030273425.1
- Location
- CP092721.1:413558-416648[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.1e-07 6.3e-05 24.3 2.9 1 23 593 615 593 615 0.98 2 10 0.0015 0.23 13.1 1.8 1 23 624 647 624 647 0.97 3 10 0.00027 0.042 15.4 1.1 1 23 664 686 664 686 0.98 4 10 0.00078 0.12 14.0 0.0 3 23 706 727 705 727 0.95 5 10 0.00047 0.072 14.7 3.1 1 23 759 781 759 781 0.97 6 10 1.1 1.8e+02 4.0 4.6 2 23 790 811 789 811 0.96 7 10 0.0013 0.21 13.2 0.3 1 23 818 840 818 840 0.98 8 10 0.00015 0.023 16.2 4.0 1 23 847 869 847 870 0.95 9 10 0.00095 0.15 13.7 2.4 1 23 875 897 875 897 0.98 10 10 2.4e-05 0.0038 18.7 4.1 1 23 903 926 903 926 0.96
Sequence Information
- Coding Sequence
- atgGATCCAAGGGGCCCTCAAAGAGCGGGGGCCCCTATAAACCCAACGACAATTACATCAACAATATCAGATGTTAATTCAGCTGTTGATAAGTCACTGCTGGATACTGTTGTTGATGACAATTGGCATGGAGTTGGTAATAcagctaaaaataataaccgtTTGTTGTTCCTCACTgttGAATATGTAGACGATCATCAGTCACGAGACTATTCAAAGGTATTTTCTCCATACGAACAGGTGTCTTTTTATTCTCCGAGAGCTCCGTCACCTCTGTCGGACTTTGAGCACAGCAAAGTGAGCCCACTGGACCCGAACATGAGTTCAACCGCAAGATATTCACCTACACCTGTACAACAGCTTCCATCTCTGGCATTTCCAAACTCCGTGGTAGTTCTTCCTGGTCCTCCTTCACCGCTTATTATTCCTAGTGACGGTCATGCTAGAgccaatattaataattatatttctagTCACAATAATACTATTCAAAATGTAGCACAGTCGGGGGATAGTGCAACAAttgattttgtaaataatgagGCTCATGGAGAAGCTCTAGTTACTAGTGTTAATGGAGAGTTAATTTTAATGCAAGGAACAAGTACTGAGTTGGAGTCAACTTCATCGTCTTCGTCCTCGGTGTCAGCTGACACTGCTGCTGCCGGACCGCTGATGCTGGCAGAAATTCCAGAGGTTGAGTTTGCATTGACGCGAGAATTTTTGGTGATGCAGGATGATGACCATTTGAATGTTGTTAATTCATTGCCCAATCAAAATTGTCAAATAAAAGAAGAGCAGATTATGATCACTGatgataatattattgataatcATCAAACggaattattgaatttaaataatggaaATGGAGTAATTTCTCAGGAACAAGTTTTAggaagaatattaaaaaataatattgaatgtaaaaaattgataaaaaatattccagcTTCTGGTAAAATAACAttgaggaaaaataaaaaacaaattcgtAACAAAACAACTttagAATGCGAGGAGTGTATTTCAGCAGCTTGTTTGAAATCTGGTGAATGTACTTGTCGAAATGTCCGCACAATTGCTGATCAACCGGTACCATCTCGAGCTGTTGCAACTTTACCAGGATCGTATCTtgcgataaataaattaccatcGGCTGCAGCTATTGGTGAACCAATAGGACAAAGTAATTATGGAGTATTTGCTAAACGTAATATTCGGCAACGCACTCAGTTTGGGCCTATCGAAGGTATACTGCGTCCTTACAACGGGGagtttcttaaaaataatggACTACCTTTGCTCTATGAAACGAATGACGGGCAGCTACTAAAAGTTGATGTGTCAGACGAAAATACTTCAAACTGGATGCGATTTGTTCGACCGGCTTTGACTTTCGATGAACAGAACTTAGTTATTTGTCAGCAGAGtgatggaattttttttcttaccacCCGGAATATTCTATCTAAAGAGGAATTGAAAGCAGGTCCAAGTTCTCAGTATGCTCTACGTCGCAATTTGACTGTTCTTCAACGAGACTCATTGTTGAAAGACAAAGAAATCCATCAGGATGACAGTAATATTAATGGATGGCCGTATTTTGAGTGCGACGAGCCATTCAAATCATCTGAAAAGTTATCAGAACCTTTAGATGCTCATCAAGATAAGAGTGAAGcaactgaaaaatttgaaagccaacaaaataattcaaaattgtcgtctgacgataataataaatcacttaAAGTTGTTGATGGACAAACAGTCCTCTATTCTTGTTCTCAATGCCCAAAAGTATTTCCACGAAGTTATAGTTTGAAGCGTCATATGCACATGCATCTCGGCTCAAAAGCGCCTCAGAAGTATGAGTGCTCAACCTGCGGCGAGAGTTTTTTGCATCCTTACAACCGCAGCCGgcacataaaaatatttcacagCGACGAAACACGAGAGAAAGAAAATGCTCGTGAAAGTTCCAGtgaatataaatgtaaatcttGTAATTtggcttttaaaaaattgtctttgTTGAATATTCACAAATTAATACACGAGCAAGATGTAAATAAAGAACACGATGGTTCTTCAACATCGTCATTGTCATCGGCATGTCCACAGTGTGGAGTTACATTTAATGCTTGGTACGATTTAATAAATCACGTATCATCAAAACATGGCCGAATTAAATTGCCTAAAGTAACTAGTACatctaaagtaaataatattaataataatcaaaatgagaATCAGGTTTCAACTCCGCCAATGTATAAATGTACAAAGTGTTACAAACGTTTTGCAACAAAAGTACGGCTCCAGCAACATTTTCTAGTCCATGGCGCTGAGGATCAAAAGCCACTGCCGTGTAATGTTTGTTGTAAAAGATTTATGAATAATTCAGCACTCTCTTGTCACTTGAAAACTCATCGTCAGGATAAACAGTTGTTTGAGTGTCCAATGTGCCGTAAATTGTTTAACCAAGTTCTCATGCTAAAAGAGCACATTGAAACACACAGAGGTGAGGATGGTATATTTAGTTGCCCTCACTGTCCGAGGACATTTACCAAGTACTCGGTTATAAGGAAACATATCAGAGCTCATCATTGTGAACGTAAACACAAATGTCAATTTTGTTCAAAACCATTCCCGACGATTGACAAATTACGTATGCATTTATTGCGTCACTCGGATCACAGGGAATTTCATTGTGCTAATTGTGGAAAGCAGTTTAAGCGTAAAGATAAGTTAAAAGAACACATGACGAGAATGCACAATGCACAGAAAATAAAACGGGATCAAATTATAACacaaaatatcAGGGGAAAAAATTTGTACCAAAAGTTAATCCGACGGATTACAAtcgttttatttataagtGCCATCAATGCCTAG
- Protein Sequence
- MDPRGPQRAGAPINPTTITSTISDVNSAVDKSLLDTVVDDNWHGVGNTAKNNNRLLFLTVEYVDDHQSRDYSKVFSPYEQVSFYSPRAPSPLSDFEHSKVSPLDPNMSSTARYSPTPVQQLPSLAFPNSVVVLPGPPSPLIIPSDGHARANINNYISSHNNTIQNVAQSGDSATIDFVNNEAHGEALVTSVNGELILMQGTSTELESTSSSSSSVSADTAAAGPLMLAEIPEVEFALTREFLVMQDDDHLNVVNSLPNQNCQIKEEQIMITDDNIIDNHQTELLNLNNGNGVISQEQVLGRILKNNIECKKLIKNIPASGKITLRKNKKQIRNKTTLECEECISAACLKSGECTCRNVRTIADQPVPSRAVATLPGSYLAINKLPSAAAIGEPIGQSNYGVFAKRNIRQRTQFGPIEGILRPYNGEFLKNNGLPLLYETNDGQLLKVDVSDENTSNWMRFVRPALTFDEQNLVICQQSDGIFFLTTRNILSKEELKAGPSSQYALRRNLTVLQRDSLLKDKEIHQDDSNINGWPYFECDEPFKSSEKLSEPLDAHQDKSEATEKFESQQNNSKLSSDDNNKSLKVVDGQTVLYSCSQCPKVFPRSYSLKRHMHMHLGSKAPQKYECSTCGESFLHPYNRSRHIKIFHSDETREKENARESSSEYKCKSCNLAFKKLSLLNIHKLIHEQDVNKEHDGSSTSSLSSACPQCGVTFNAWYDLINHVSSKHGRIKLPKVTSTSKVNNINNNQNENQVSTPPMYKCTKCYKRFATKVRLQQHFLVHGAEDQKPLPCNVCCKRFMNNSALSCHLKTHRQDKQLFECPMCRKLFNQVLMLKEHIETHRGEDGIFSCPHCPRTFTKYSVIRKHIRAHHCERKHKCQFCSKPFPTIDKLRMHLLRHSDHREFHCANCGKQFKRKDKLKEHMTRMHNAQKIKRDQIITQNIRGKNLYQKLIRRITIVLFISAINA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01006530;
- 90% Identity
- iTF_01006530;
- 80% Identity
- -