Basic Information

Insect: Microplitis deprimator
Gene Symbol: prdm10_1
Assembly: GCA_964016945.1
Location: OZ024708.1:23447485-23450610[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.9e-07 5.8e-05 24.3 2.9 1 23 594 616 594 616 0.98

2 10 0.0014 0.21 13.0 1.8 1 23 625 648 625 648 0.97

3 10 0.00026 0.039 15.4 1.1 1 23 665 687 665 687 0.98

4 10 0.00074 0.11 13.9 0.0 3 23 707 728 706 728 0.95

5 10 0.00045 0.067 14.6 3.1 1 23 773 795 773 795 0.97

6 10 1.1 1.6e+02 4.0 4.6 2 23 804 825 803 825 0.96

7 10 0.0013 0.19 13.2 0.3 1 23 832 854 832 854 0.98

8 10 0.00014 0.021 16.2 4.0 1 23 861 883 861 884 0.95

9 10 0.00091 0.14 13.7 2.4 1 23 889 911 889 911 0.98

10 10 2.3e-05 0.0035 18.7 4.1 1 23 917 940 917 940 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.9e-07	5.8e-05	24.3	2.9	1	23	594	616	594	616	0.98
2	10	0.0014	0.21	13.0	1.8	1	23	625	648	625	648	0.97
3	10	0.00026	0.039	15.4	1.1	1	23	665	687	665	687	0.98
4	10	0.00074	0.11	13.9	0.0	3	23	707	728	706	728	0.95
5	10	0.00045	0.067	14.6	3.1	1	23	773	795	773	795	0.97
6	10	1.1	1.6e+02	4.0	4.6	2	23	804	825	803	825	0.96
7	10	0.0013	0.19	13.2	0.3	1	23	832	854	832	854	0.98
8	10	0.00014	0.021	16.2	4.0	1	23	861	883	861	884	0.95
9	10	0.00091	0.14	13.7	2.4	1	23	889	911	889	911	0.98
10	10	2.3e-05	0.0035	18.7	4.1	1	23	917	940	917	940	0.96

Sequence Information

Coding Sequence: atgGATCCAAGGGGCCCTCAAAGAGCGGGGGCCCCTATAAACCCAACGACAATAACATCAACGATATCAGATGTTAATTCAGCTGTTGATAAGTCACTGCTGGACACTGTTGTTGATGACAATTGGCATGGAGTTGGTAATAcagctaaaaataataaccgcTTGTTGTTCCTCACTgttgAATATGTAGACGATCATCAGTCACGAGACTATTCAAAGGTATTTTCTCCGTACGAACAGGTGTCTTTTTATTCCCCGAGAGCTCCGTCACCTCTTTCGGACTTTGAGCACAGCAAAGTGAGCCCACTGGACCCGAACATGAGTTCAACTGCAAGATATTCACCTACACCTGTACAACAGCTTCCATCTCTGGCATTTCCAAACTCCGTAGTAGTTCTTCCTGGTCCTCCTTCACCGCTTATTATTCCTAGTGACGGTCATGCTAGAgccaatattaataattatatttctagTCACAACAATACTATTCAAAATGTAGCACAGTCGGGTGATAGTGCAACAATTGGTTTTGTAAATAATGAGGCTCATGGAGAAGCTCTAGTTACTAGTGTTAATGGAGAGTTAATTTTAATGCAAGGAACAAGTACTGAGTTGGAGTCAACCTCATCGTCTTCGTCCTCGGTGTCAGCCGACACTGCTGCTGCCGGACCGCTGATGCTGGCAGAAATTCCAGAGGCTGAGTTTGCATTGACGCGAGAATTTTTAGTGATGCAGGGTGATGACCATTTGAATGTTGTTAATTCAATGCCCAATCAAAATTGCGAAATAAAAGAAGAGCAAATTATGATCACtggtgataataatattattgataatcatCAAACggaattattgaatttaaataatggagATGGAGTAATTTCTCAGGAACAAGATTTAGGaagaatattgaaaaataatattgaatgtaaaaaattaataaaaaatattccagCTTCTGGTAAAATAACattgaggaaaaataaaaaacaaattcgtaataaaacaattttagAATGTGAGGAGTGTATTTCAGCAGCTTGTTTGAAATCTGGTGAATGTACTTGTCGAAATGTCCGCACAATTGCTGATCAACCGGTACCATCTCGAGCTGTTGCAACTTTACCAGGATCGTATCttgcgataaataaattaccatcgGCTGCAGCTATTGGTGAACTAATAGGACAAAGTATTTATGGAGTATTTGCTAAACGTAATATTCGGCAACGCACTCAGTTTGGGCCTATCGAAGGTATACTGTGTCCTTACAACGGGGagtttcttaaaaataatggaCTACCTTTGCTCTATGAAACAAATGACGGGCAGCTACTAAAAGTTGACGTGTCAGACGAAAATACTTCAAACTGGATGCGATTTGTTCGACCGGCTTTGACTTTCGATGAACAGAACTTAGTTATTTGTCAGCAGAgtgatggaattttttttcttaccacCCGGAATATTATATCTAAAGAGGAATTGAAAGCAGGTCCAAGTTCTCAGTATGCTCTACGTCGCAATTTGACTGTTCTTCAGCCAGATTCATTGTTAAAAGACAAAGAAATCCATCAGGATGACAGTGATATTAATGGATGGCCGTATTTGGAGAGCGACGAACCATTCAAATCATCTGAAAAGTTATCAGAACCTTTAGATGCTCATCAAGATAAGAGTGAAgtaactgaaaaatttgatagcgaacaaaataattcaaaattgttgtctgacgataataataaatcacttaAAATTGTTGATGGACAAACGGTCCTCTATTCCTGTTCTCAATGCCCAAAAGTATTTCCACGAAGTTATAGTTTGAAGCGTCACATGCACATGCATCTTGGCTCAAAAGCGTCTCAGAAGTATGAGTGCTCAACCTGCGGCGAGAGTTTTCTGCATCCTTACAACCGCAGCCggcacataaaaatatttcacagCGACGAAACACGAGAGAAAGAAAATACTCGTGAAGGTTCCAgtgaatataaatgtaaatctTGTAATTtggcttttaaaaaattgtctttgttgaatattcataaattaatacacGAGCAAGATGTAAATAAAGAACAGGATGGTTCTTCAACATCGTCATTGTCATCAGCATGTCCACAGTGTGGAGTTACATTTAATGCTTGGTACGATTTAATAAATCACGTATCATCAAAACATGGCCGGATTAAATTGCCTAAAGTAACCAGTACatctaaagtaaataataataataataataataataataataataataataataataataataataatcagcaTCAGAATCAGGTTTCAACTCCGCCAATGTATAAATGTACAAAGTGCTACAAACGTTTTGCAACAAAGGTACGGCTCCAGCAACATTTTCTAGTCCATGGCGCTGAGGATCAAAAGCCACTGCCTTGTAATGTCTGTTGTAAAagatttatgaataattcagCACTTTCTTGTCACTTGAAAACTCATCGTCAGGATAAACAATTGTTTGAGTGTCCAATGTGCCGTAAATTGTTTAACCAAGTTCTCATGCTGAAAGAGCACATTGAAACACACAGAGGTGAGGATGGTATATTTAGTTGCCCTCACTGTCCGAGGACATTTACCAAGTACTCGGTTATAAGGAAACATATCAGAGCTCATCATTGTGAACGTAAACACAAATGTCAATTTTGTTCGAAACCATTTCCGACGATTGACAAATTACGTATGCATTTATTACGTCACTCGGATCACAGGGAATTTCATTGTGCTAATTGTGGAAAGCAGTTTAAACgtaaagataaattaaaagaacacATGACGAGAATGCACAATGCACAGAAAATAAAACGGGATCAAATTATAACacaaaatatcaGGGGAAAAAATTTGTACCAAAAGTTAATCCGACGGATTacaatcgttttatttataagtgcCATCAATGCCTAG
Protein Sequence: MDPRGPQRAGAPINPTTITSTISDVNSAVDKSLLDTVVDDNWHGVGNTAKNNNRLLFLTVEYVDDHQSRDYSKVFSPYEQVSFYSPRAPSPLSDFEHSKVSPLDPNMSSTARYSPTPVQQLPSLAFPNSVVVLPGPPSPLIIPSDGHARANINNYISSHNNTIQNVAQSGDSATIGFVNNEAHGEALVTSVNGELILMQGTSTELESTSSSSSSVSADTAAAGPLMLAEIPEAEFALTREFLVMQGDDHLNVVNSMPNQNCEIKEEQIMITGDNNIIDNHQTELLNLNNGDGVISQEQDLGRILKNNIECKKLIKNIPASGKITLRKNKKQIRNKTILECEECISAACLKSGECTCRNVRTIADQPVPSRAVATLPGSYLAINKLPSAAAIGELIGQSIYGVFAKRNIRQRTQFGPIEGILCPYNGEFLKNNGLPLLYETNDGQLLKVDVSDENTSNWMRFVRPALTFDEQNLVICQQSDGIFFLTTRNIISKEELKAGPSSQYALRRNLTVLQPDSLLKDKEIHQDDSDINGWPYLESDEPFKSSEKLSEPLDAHQDKSEVTEKFDSEQNNSKLLSDDNNKSLKIVDGQTVLYSCSQCPKVFPRSYSLKRHMHMHLGSKASQKYECSTCGESFLHPYNRSRHIKIFHSDETREKENTREGSSEYKCKSCNLAFKKLSLLNIHKLIHEQDVNKEQDGSSTSSLSSACPQCGVTFNAWYDLINHVSSKHGRIKLPKVTSTSKVNNNNNNNNNNNNNNNNNNNQHQNQVSTPPMYKCTKCYKRFATKVRLQQHFLVHGAEDQKPLPCNVCCKRFMNNSALSCHLKTHRQDKQLFECPMCRKLFNQVLMLKEHIETHRGEDGIFSCPHCPRTFTKYSVIRKHIRAHHCERKHKCQFCSKPFPTIDKLRMHLLRHSDHREFHCANCGKQFKRKDKLKEHMTRMHNAQKIKRDQIITQNIRGKNLYQKLIRRITIVLFISAINA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01006530;
90% Identity: iTF_01006530;
80% Identity: -