Mmed017323.1
Basic Information
- Insect
- Microplitis mediator
- Gene Symbol
- -
- Assembly
- GCA_029852145.1
- Location
- CM056850.1:22188161-22195058[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.5e-12 5.6e-09 36.5 0.0 1 39 297 336 297 340 0.90 2 4 5.3e-12 6.4e-09 36.3 0.1 2 39 352 389 351 392 0.94 3 4 1.9e-18 2.3e-15 56.9 0.0 2 45 407 451 406 451 0.97 4 4 2.2e-18 2.7e-15 56.8 0.1 1 42 458 500 458 501 0.97
Sequence Information
- Coding Sequence
- ATGTATTTAtcatcactATTGAAAACGGcggatcaattaaaaataaaaggacTCTGCGAAGTGCCGGAGAGTAAGGAAGCGCCAGCAACAGTAAGCTTGAGCTCGTCACCACGAGAACCAGGAGGTGGTGCATCGAGATTCAATTACGCTAAACTTAAGAGACATCACCCAAAGTACAAACGACAGCGAACGGGATTCGCTGGTGGAGTTGCTGGCGTTGGAGAGGCTGCTGTTGGAGGAGGAGCTGGAAGACCGACTAGCACTGACTCGAGGGGACAATACGACAGGTACAAAGAGGAGGATAACGAGAACACTGGGGCTGGAGGATTCGGCTGTGAAAACGACAAAGAGAATCACCGGGGTGACTGGCAGACGGAGGATGAGGAGTGCGGAGGAGACGCAGCAGTAATCCTGGAATCCTGCCAGCGAGACACCAACAACGGTAACGGCACAAACAACAATAACGgtGACATGTTCTGTCACACAGGTCTAGGTCATTACGGTCACCATCCGGATCCAGGCGAAGTCGACTTACCACCAGAGACTCAGCCGACGCCGCCGAGTGCCACCCTCGTCGGTACCACTATCACACATCTCAGGGATACTGATAACCATTCTACAGaTATACAAAATTGTGATaacgtcaaaataaaatttgaaacacTTCACACGATGGATTCATCAGACACAATAGACATTGACAGTCATATGTCGGATTGTGCGAGCGTTAGTTCTAAACATGCAGCTGAGGGTGACAATATGATGATGATAACACCCGAATTATTGGGTTTGATGCCGTCCGGCAGTTCAGTTCATTCAAATTCCGGTGAAAACAATTCACGGAGTCACTCGGGAGGCTCCGGACATCATCATGGCTCTAAATCATGGACACAGGAAGACATGGACGCTGCACTTGACGCCCTCAGGAATCACGACATGAGTTTAACAAAAGCTTCGGCGACATTCGGAATCCCATCGACGACATTGTGGCAGCGCGCCCACCGACTGGGCATCGACACTCCAAAGAAAGACGGACCCACTAAATCCTGGAGCGACGAGAGTCTGAACAACGCGTTGGAGGCTCTAAGGACGGGAACTATTTCCGCGAACAAAGCGTCGAAGGCCTTCGGAATACCCTCGAGTACGCTGTACAAAATAGCCAGGAGAGAGGGCATAAGATTGGCGGCTCCATTCAACGCGAGTCCCACCACTTGGTCGCCGGCGGATCTTGACAGAGCTCTTGAGGCAATAAGGTCTGGCCAGACTTCTGTACAAAGAGCTTCCACCGAATTCGGTATACCCACGGGTACTCTCTACGGGAGATGTAAACGAGAGGGAATTGAATTGAGTCGGAGTAATCCAACTCCTTGGAGTGAGGATGCTATGACCGAAGCTCTCGAAGCTGTCAGgtTGGGTCACATGAGTATAAATCAAGCGGCGATTCATTACAATCTCCCATACTCATCTCTCTACGGTCGTTTCAAACGCGGCAAGTATGAAGAACCAGCCGCAGAATTATCCCAAGACGGTACAAATCCCCACTTCCACCAGAGCCCGCACCACAATCACTCATCTTCACTTCCCGATCAAATGCCTTATCAGGGCAGCTGA
- Protein Sequence
- MYLSSLLKTADQLKIKGLCEVPESKEAPATVSLSSSPREPGGGASRFNYAKLKRHHPKYKRQRTGFAGGVAGVGEAAVGGGAGRPTSTDSRGQYDRYKEEDNENTGAGGFGCENDKENHRGDWQTEDEECGGDAAVILESCQRDTNNGNGTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDTDNHSTDIQNCDNVKIKFETLHTMDSSDTIDIDSHMSDCASVSSKHAAEGDNMMMITPELLGLMPSGSSVHSNSGENNSRSHSGGSGHHHGSKSWTQEDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAAELSQDGTNPHFHQSPHHNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_01560354;
- 80% Identity
- -