Mman026314.1
Basic Information
- Insect
- Microplitis manilae
- Gene Symbol
- Prdm15
- Assembly
- GCA_030273425.1
- Location
- CP092728.1:2666063-2669151[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.5 3.9e+02 2.9 0.1 2 23 241 262 240 262 0.94 2 14 0.0004 0.061 14.9 1.9 3 23 271 292 270 292 0.91 3 14 1.7e-05 0.0026 19.2 1.8 1 23 419 441 419 441 0.97 4 14 0.00069 0.11 14.1 1.9 1 23 445 468 445 468 0.96 5 14 1.1e-05 0.0018 19.7 0.7 1 23 478 500 478 500 0.97 6 14 0.23 35 6.2 5.3 2 20 505 523 505 525 0.93 7 14 0.0011 0.16 13.5 0.5 2 23 530 551 530 551 0.97 8 14 4.1e-05 0.0064 18.0 2.2 3 23 572 592 571 592 0.98 9 14 0.0019 0.29 12.8 1.1 1 23 597 619 597 619 0.98 10 14 0.00057 0.088 14.4 0.1 2 23 625 646 624 646 0.95 11 14 0.00018 0.028 15.9 6.4 1 23 651 674 651 674 0.97 12 14 0.16 24 6.7 4.4 1 23 680 702 680 702 0.96 13 14 0.0043 0.66 11.6 6.6 1 23 709 732 709 732 0.95 14 14 3.6 5.6e+02 2.4 8.7 1 23 737 760 737 760 0.94
Sequence Information
- Coding Sequence
- atgttgtcaataaaacaaaagtccgaagacgataataaattaattggttGCGATGTTGGCAACAACAacataacaattaatttttcaggaTGCAACATCTGCGGGGATTCCCACAGCACTCATgagtgttattttttattaaatttaaactacatcaAAGACACTGAGACAATATCACGAGCACGTCAGACATTACCCAAAGACCTGGAGATCACTCGAATGGCTGATGGAACGACTAGTATAATTGCCAAGTGTGATTACCAACGAGGAACAACCTTTGGACCTTTTGAATCCAAACGTAACTGGGCAATGAATCCTGCGACTAATTTTCCTATCAAGGTTTTCGGAGAGTCGGTCAATGACACTTATTACCTAGAGTATTCCGACGAGGACATCAGTAACTGGATGTGCTTCGTACTGCCTGCCACTAACGCGCGGGAACAGAATTTAATTTGCTATCAAATGAAGCAGGATATTTTTTACACGGCGATGAGAACGATTACAGCTGGAGAAGAGTTGAGAGTCTGGTACGCGCCGTACTATGCGCAGAAGATGAAGATGCCGCTGTATATAACCGATTCTACAAGTCAAGACAAACCCATTCAGGTCGTGGCTAAAGATCAGGACACGCTGGAGGTGCTAGACAAAGCTATGGCGCAGGAATTAGCCAAGAGACTTCCAGCCACGCAGCTGGGTGCTAAAGATGATAAGAAGATTTGGACATGTCGCATTTGCTCGGTGACGATTAATTCAGTGGTCGCTTACGCGAAGCATCAGATGGATCACTACAAGCCTCTAGTTGGGTCTTTTTGTACtgtttgtgataaaaaattttctagtgtCTCTGCCTTAGAGAAACATAGAGCTGACTGTCATGATCCGGCGGTCAGTGAAGATATTGGGATACCGACTTCGGCGAACCAGCAGCAGCAAAACGCCGCGACTATTTTAAATATGAGCGAGGATTTCATGAGGGGAAAAGAAAATCAGCATGATCTATCACTGCTggataattcaattaatactAATGATTTGCTTCACCATGAGGgaaatcttatagaaaattCTTCATTGAAATCAATCCTTGAGAATCAGTGTTTGAATATGAACATAAGTTCAATAGCTGAGTCTATTTTATCTGAAAATATATCAGGTGCTGATTCGGttaaatttaatgttgaaGAATTGTCATCTGAATTGCTAGACATATCTCCAGATGATGATCAGAGAACTACTGGACGTTCGATTGATGATTTTGATTGTGATATTTGCGGTAAAAAATTCCAGCGTGTTAATTATTTGTATCGTCATTTACGTAAACACACTGGGGAATTTATTTGTCCCACTTGTTTGTGCGTTTTTGCTAGAAAAGACAATTTGCTGTCGCATGTTTGCTCAGCTCATACGACacagaataaaaataacgtACGCTATCAGTGCTCATACTGTCCTAAAAATTTTGCGGttgaaaaatatctgaaaagaCACATTGCCCAGCACGTGGAATTCAATCGCTGCAAGAGATGCCGTCATAAATTTACGACAAAGTCTGAACTGGACTCACACAAATGTGCAGCGCCCAAGCCAGTTTGCGGACAGTgtgggaaaaaatttcttaacgTAGTGTATCTTAATCGTCATATAAAAAGACACAATGAGGTGCCAAAAGTCCCCaagaaaagaattaaaaatgtgGAAGAAAAGCCGGCGATTTGTGAAAAATGCggggaaatttttaaaaatctctgCAGTCTTCAGCAGCATCAAAGATCTCATGGCGAAAGAACTTACGAGTGTGATATTTGTAACCGACGTTTTCATCGGATCGGTGTTTTGAAGGAACACAAAGCCACTCATCAGAATGTCGAGCTGCCTTGCAATATTtgcgataaaaaattaaaaagtaaaaaagctCTGGACGTTCACATTCTGCTGCACGGAAACAAAAAGTTTCAGTGCGACAAATGCGACAAGAGTTTCtttcaaaaatgtaattatctCAAGCACTACAAAAGCGTTCATGCAGAAAAGAGCACTCACACTTGCTCGCACTGTTCAATGCAATTcaccaataaaataatttataataaacatatCGCGAGTCACAGTAAAACAACTGCTGAATTTCTCTGCAATActtgcaataaatattttcacacTCAGGCTAAACTTAACAGACATGTTCAGACTTGTCACAGtggtattatttattgttgtcCTTTCTGCAAGATGACTGCAAGACATCGTCACAGTATGCGAAGACACTTTGAGAGACAGCATAAAGATTCAAATGATGAATGGAATAAACCAGGATTTGTTAATCAGTTTGCTGAAAAATCACCGGttgaatttgttaaaaataattcgaaaaaacctGGTACTTCTAATAAACGAGTTTTGCATTCTAAACAACCATCAGTTGGATCAAATGATGAACCAGTTATTGGACCAATTGCTGGATCAATTACTGAACCAATTGTTGGAACAAGTACTGGACCAATTACAGGATCAGTTAATGAATCAATTACAGGTTCAGTTAATGGACCAATAACAGAATCTGTTACTGGAGCAATTACAGGATCAGTAGTTGAATCATTTcctgttaatttaaatactgtACAAGTAAATCaagttgaagaaaataatcatgcaataaataatcaagttttaatggaaaatataaaagttgATCAACAAATAAACAATACTCAGTTACTTAATGATGTACCACAACTTAGTATTGATACAGATTCACAACTCGCTGAATCTGTTTTAAACAACACTTATATTTTTGGTGAAGATGGCGATATCATGTTCTACGTCTTGGATAATAACCCCATCCCGggttactaa
- Protein Sequence
- MLSIKQKSEDDNKLIGCDVGNNNITINFSGCNICGDSHSTHECYFLLNLNYIKDTETISRARQTLPKDLEITRMADGTTSIIAKCDYQRGTTFGPFESKRNWAMNPATNFPIKVFGESVNDTYYLEYSDEDISNWMCFVLPATNAREQNLICYQMKQDIFYTAMRTITAGEELRVWYAPYYAQKMKMPLYITDSTSQDKPIQVVAKDQDTLEVLDKAMAQELAKRLPATQLGAKDDKKIWTCRICSVTINSVVAYAKHQMDHYKPLVGSFCTVCDKKFSSVSALEKHRADCHDPAVSEDIGIPTSANQQQQNAATILNMSEDFMRGKENQHDLSLLDNSINTNDLLHHEGNLIENSSLKSILENQCLNMNISSIAESILSENISGADSVKFNVEELSSELLDISPDDDQRTTGRSIDDFDCDICGKKFQRVNYLYRHLRKHTGEFICPTCLCVFARKDNLLSHVCSAHTTQNKNNVRYQCSYCPKNFAVEKYLKRHIAQHVEFNRCKRCRHKFTTKSELDSHKCAAPKPVCGQCGKKFLNVVYLNRHIKRHNEVPKVPKKRIKNVEEKPAICEKCGEIFKNLCSLQQHQRSHGERTYECDICNRRFHRIGVLKEHKATHQNVELPCNICDKKLKSKKALDVHILLHGNKKFQCDKCDKSFFQKCNYLKHYKSVHAEKSTHTCSHCSMQFTNKIIYNKHIASHSKTTAEFLCNTCNKYFHTQAKLNRHVQTCHSGIIYCCPFCKMTARHRHSMRRHFERQHKDSNDEWNKPGFVNQFAEKSPVEFVKNNSKKPGTSNKRVLHSKQPSVGSNDEPVIGPIAGSITEPIVGTSTGPITGSVNESITGSVNGPITESVTGAITGSVVESFPVNLNTVQVNQVEENNHAINNQVLMENIKVDQQINNTQLLNDVPQLSIDTDSQLAESVLNNTYIFGEDGDIMFYVLDNNPIPGY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01003762; iTF_01004554; iTF_01006522;
- 90% Identity
- iTF_01004554;
- 80% Identity
- -