Mdep027063.1
Basic Information
- Insect
- Microplitis deprimator
- Gene Symbol
- -
- Assembly
- GCA_964016945.1
- Location
- OZ024714.1:15860801-15866318[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.8e-12 6.7e-09 36.3 0.0 1 39 377 416 377 420 0.90 2 4 3.2e-12 7.7e-09 36.1 0.1 2 39 432 469 431 472 0.94 3 4 1.2e-18 2.8e-15 56.7 0.0 2 45 487 531 486 531 0.97 4 4 1.4e-18 3.2e-15 56.5 0.1 1 42 538 580 538 581 0.97
Sequence Information
- Coding Sequence
- ATGTCCTGCACGAAAAGTCACCGACCAAGCCTTGATATACGAGAGGGCGAACAAGAGCCCGGGGGCCACGTCGAGGCCTCAACTCCCTCGCACTCTCATTCCCATCCTCGTTCTCGTCCTCGTCCTCTTGCTCACCCGCCCAGCACTTTGCTCTCCTCTTCATTCTTCCTGCGGGCGTTTTTCCCTTCGCCGACACCCCGGCTCGTACAATCGCTCCAACTACACACTACTACTTTTACTACAACTACAACTACCtcattattGAAAACGGcggatcaattaaaaataaaaggactCTGCGAAGTACCGGAGAGTAAGGAAGCGCCAGCAACAGTAAGCTTGAGCTCGTCACCACGAGAACCAGGAGGTGGTGCATCGAGATTCAATTACGCGAAACTTAAGAGACATCACCCAAAGTACAAACGACAGCGAACGGGATTCGCTGGTGGAGTTGCTGGCGTTGGAGAGGCTGCTGTTGGAGGAGGAGCTGGAAGACCGACTAGCACTGACTCGAGGGGACAATACGACAGGTACAAAGAGGAGGATAACGAGAACACTGGGGCTGGATTCGGCTGTGAAAACGACAAAGAGAATCACCGGGGTGACTGGCAGACGGAGGATGAGGAGTGCGGAGGAGACGCAGCAGTAATCCTGGAATCCTGCCAGCGAGACACCAACAACGGTAACGGCACAAACAACAATAACGgtgACATGTTCTGTCACACAGGTCTAGGTCATTACGGTCACCATCCGGATCCAGGCGAAGTCGACTTACCACCAGAGACTCAGCCGACGCCGCCGAGTGCCACCCTCGTCGGTACCACTATCACACATCTCAGGGATACTGATAACCATTCTACAGaTATACAAAATTGTGAtaacgttaaaataaaatttgaaacacTTCACACGATGGATTCATCAGACACAATAGACATTGACAGTCATATGTCGGATTGTGCGAGCGTTAGTTCAAAACATGCAGCTGAGGGTGACAATATGATGATGATAACACCCGAATTATTGGGTTTAATGCCGTCCGGCAGTTCAGTTCATTCAAATTCCGGTGAAAACAATTCACGGAGTCACTCGGGAGGCTCTGGACATCATCATGGCTCTAAATCATGGACACAGGAAGACATGGACGCTGCACTTGACGCCCTCAGGAATCACGACATGAGTTTAACAAAAGCTTCGGcGACATTCGGAATCCCATCGACGACATTGTGGCAGCGCGCCCACCGACTGGGCATCGACACTCCAAAGAAAGACGGACCCACTAAATCCTGGAGCGACGAGAGTCTGAACAACGCGTTGGAGGCTCTGCGGACGGGAACTATTTCCGCGAATAAAGCGTCAAAGGCCTTCGGAATACCCTCGAGTACGCTGTACAAAATAGCCAGGAGAGAGGGCATAAGATTGGCGGCTCCATTCAACGCGAGTCCCACCACTTGGTCGCCGGCGGATCTTGACAGAGCTCTTGAGGCAATAAGGTCTGGCCAGACTTCTGTACAAAGAGCTTCCACCGAATTCGGTATACCCACGGGTACTCTCTACGGGAGATGTAAACGAGAGGGAATTGAATTGAGTCGGAGTAATCCAACTCCTTGGAGTGAGGATGCCATGACCGAAGCTCTCGAAGCTGTCAGgtTGGGTCACATGAGTATAAATCAAGCGGCAATTCATTACAATCTCCCATACTCATCTCTCTACGGTCGTTTCAAACGCGGCAAGTATGAAGAGCCAGTCGCAGAGTTATCTCAAGACGGTACAAATCCCCACTTCCATCAGAGCCCGCACCACAATCACTCATCTTCACTTCCCGATCAAATGCCTTATCAGGGCAGCTGA
- Protein Sequence
- MSCTKSHRPSLDIREGEQEPGGHVEASTPSHSHSHPRSRPRPLAHPPSTLLSSSFFLRAFFPSPTPRLVQSLQLHTTTFTTTTTTSLLKTADQLKIKGLCEVPESKEAPATVSLSSSPREPGGGASRFNYAKLKRHHPKYKRQRTGFAGGVAGVGEAAVGGGAGRPTSTDSRGQYDRYKEEDNENTGAGFGCENDKENHRGDWQTEDEECGGDAAVILESCQRDTNNGNGTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDTDNHSTDIQNCDNVKIKFETLHTMDSSDTIDIDSHMSDCASVSSKHAAEGDNMMMITPELLGLMPSGSSVHSNSGENNSRSHSGGSGHHHGSKSWTQEDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVAELSQDGTNPHFHQSPHHNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_01560354;
- 80% Identity
- -