Mdem003252.1
Basic Information
- Insect
- Microplitis demolitor
- Gene Symbol
- MBD-R2
- Assembly
- GCA_000572035.2
- Location
- NW:907601-925346[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-18 6.3e-15 53.9 0.5 9 69 546 606 542 614 0.91 2 2 2.5 7.1e+03 -3.9 0.0 43 58 1168 1183 1166 1191 0.81
Sequence Information
- Coding Sequence
- ATGGCGCGTAAATGCTGcgttaaaaattgtgaaataaaTGGTAGTGATGTACATGCTGTTGGTATACCGATTCATAGATTTCCTAAGGATCAACAACTTAAGTGTAAATGGTTAAAAAACGCtggtttttcaaataattacaaacCTCTACCCGGTCAATTTGTTTGCTTCCgacatttttgtaaaaatgattatgaAAAAGTCAACAAAAATACGGCAAATAGTCCTGgacataaatttttgctgaaaaaaGGCTCGGTGCCGACGATATTTGATAACTATGAGAATCATCCAGaTCCCATTATTCCATTTACAAAGTCATCagaattgaataattcgaCAGAAGATTCAAATCCAGTAAATATAGAAATGACACAAATGGAGAAAGAAAATTCACATGAAACAGAATTATCAAATTCAAAACCAGATGCTGAGAAATCGAAACCAGCTTCTGAAGAATCAAAGAAGGAAACATCGAAAAATTTACCCATTAACACAGATAATAAATctgaaagtattaaaaaatcaccACCAAGTTCTGATAATTTAAGTACAGAGAATACACAGAATGTTGTTGATACTGCAGTAGAAAAGAAAGAATTCACAGAAGATCCACCAGCGAAACCGCCACCTCTTTCAAATGACTCGATTGTTAAATCAGAAATTAGCagcaattcaaataataaatctaatggcagcgtagaaaaaaatactgctGTTAAAAAAACATCAGGGGACAATAAAAATGGCAAAAATACCAAGtctggtaaaaataaaaccgctAATAAATTGGGGCTAAAATTCTATCCTGGCGCGAAACTGGAGGCTAaagattttaatgaaaaatgGTACGCAGCACGAGTTGTCGAAACAGATTGGGCTGAACGGGAAGTGTTGATACATTTTGATAAGTGGAGTTCTAGATATAATGAATGGATACCAATGGACAGTTCTAGATTAAGAAGCTTTCAAATGCAACCTAgtgaACAAGTGTGGGTGCTACCGGATCAgGATACAAAAATGCGTGAATTTGCTGTCGGGGAAAGAATTTTAGCAACGTGGGCAGATGGAAGAAAATATCCAGCCAAAGTAAATGCAGTTTTGGGAGACGATAAATATGATGTTCTTTTTGATGACGGTTATGCTAAAATAGTTCGATCATCGAAAATGACTAAAATTGCGTCCACAAGTTCTAAGaattcaTCAAAAACAATGGAATCAGAATCTTACATTGGCAGTAAACAAGAACGGCGAGATAAAAGTAGAAAACACTCAGTCGTCGATTTATTTTCCCacaaaaaaagaactaaagcAGATGGAGTTGATAAATCACTAAACAAAAAAGATGATAGTGTTGTTGTAAATGATAACaatgaacaattaaataattccgaTAGTGTTAATGACAGTGCTGATGCCACTGGTGGCGAACTCGATGACTCTAGCTCGGAAGTACTACAgggttttgaaaattcaaaacccAAAGTTAGGAATGGCGCCAAAAGAAAACGTGAGGTAGTCAATGATTACGACGATGATACTGGGCCAGAGTGGGTCGATGGTGAACCACAGGGTGTTGAATCATTTGCTGTCGATGGTAATGAAGGCTCGCGTCGTTCAATAATAATACCCGATAAAAAGTTACCACCTGGATggcaaaaacattttatacaGAGAAAAACAGGAAGTTCTGCTGGCAAATGGGACGTCGTCTTCTTTCACGAACCgactagtaaaaaatttcgatcaaGAAATGATTTGAAAGTTTTCTTTGAGTCCCAACGTCCTAATAATTATGATCcagataaatttgacttttgtATTCATCgcagaaaaaaaacagtttctGCAAAAGCTAAAACAGATGCGGGTACAAGTGGTAGTAGCAACCCACCAACGACTAATGAAgtgccaaaaaaaataaaaacacttttACCTAAGAGTAAAACCGCTACGACAAATGATTTGTTACTGACACCAGTAACTAATAATTACTCTACGCCTAATCCTGCGCCTGTGGAAGATACTGCAGTTTTTATTGGTGGTCTACGAGTCGAGATGGAAAACAGTGCATACAAATGTCCTAAAGACGGATGTGCCAAAACACTTCGTAATGAAAATCTCTTACAAATGCACATAAAACATTATCACCCAGAGTTCTCAAAGTATTTAGGATCAACACCAAACGTTGCTGATTTAGCGTACGCGCGTACAATAGGCGAACCAATAATTGATGCAACtccgaaaaaatcaatcaacAATTATTCCGATAAACCAACTAGCCGATTTGACAAAAGAAAAACTAActcagataaattttcatcatcacTGAATCATTCGCTCAGTCAATCTTTTGCCGCATCATCTCCGTTGTCTGTTGCGTCACCAGACACGTCTCAAATTGACAGTCAGTTGAACGGGTTGAAGGATGACATGAAACTTGAATTGATGTCACCGGGTTCAAGTGCTTCTCTGGATATTGATGATGAGTTGACCAAAAAGTCTGACGGTAGCTGTGCAATGTCACCTGGTTCACTGTTCGACATGAAGTCTAAAGAGGAAAAAACTCAAGCTGGAATAAAAACATTGTTGCCTTTACGACCTGCTAATTCAGTAGACACTACACGAATGGATCGTTCTAAATCCCTTGATGACACTTTTAATTCTGATAGAGGGCAACGGAAACGTCAATTGTCTGAATACAGCTCTGATGCTTCGACCAAAAGTAAAAAACGACatgGCATACAGGAGCTTACGGATGATTATGGGGATTTAGATGACAGCGCATTGGATACCGAAGGACCTACACCACTTATGTATAGATTCAGTCGTAGAAAGTCTGACTCTAAGAGCGACGATAACAGCCAgaatggTGACGGtgtaatgatgatgataaatggTGAAATGGTAAAGGTCGAACAATTGAAACgggaagaaataataaattgtacttGTGGTATTGTTGAAGAAGACGGACTTATGATACAATGCGATTTGTGCCTTTGCTGGCAACATGGGCATTGTAATGCCATTGAACGGGAAAAAGATGTAccggaaaaatatatttgttatatttgCCGACATCCGTATCGTCAGAGAccatcgaaaaaatatatacatgaccAAGATTGGATCAAAGAAGGCAAATTACAaagtttgTCAAAAAGAACAAAGAATCAAGATACTATTAATAAACGAGCGGCGATGCTGAAACGATCTTACGATTTAGTTGGAGCTCTAATACAGATACAACAAATTCTTCATAGTTTGAGAGTCAAGATAAATGTTGCACAaaaCAAAGACCATccgaaattatatttatgggCTAAAAACTGGGAAAAATCCGAATTGCCCAAACCAAATGTGGAACCAATACCaataatggaaataattaaatccgaGCCAGTATCACCGGATACTGATACCGATGTCTGTCAATCGGACATGAAATCAGAACCAATAGATTCTGATACAAAAGAGGAAATAAATTGCGATAGATCGATACACTCTGATTcagaattaatgaaaattcttGAAGAGGACAATAATCCTTCTGCTGACGaaccaaaaataaagaaagaaaattcaattaaaaataataaagaggataatttattaacaccCACAGCAACAAACGGTGACGACAAAATTCcacaaaaaagtaataaaactgATGGGCCTAAAGTAAAATCAAAAGAtgatacagaaaatttaaatagtcaaTCAGGTGAGCCGAGTACCGATAATCAAATGCCATTCGCTGCAGTAAATGGTGACGATTCTTTGAACGTAAATGACAATGAGCAAGTGATCCAATCATCAAAAGGATTTGAATCAACGTTACAAGACAAACCGGCTATGCCTCAGCCTTTTATTCCTGAACCAGAAGCTCCAATAGATCCTGATGAATGCCGACTACGTTTGTTGGATCACGTCgatcattttcaaaatcatattGAAGCTCGGCTAACTGGCATTGAAGCTCAAGTATCTCTTTTAGAAGCCATGGATCCTGATAGTGATTTACCCTTGGATAAAGTTGAACTCCGTGTTAAAGAAACTATGAAAATGTTATTACGTGATCTCAATACTGTAAGAAAACTAGCCTcgttgtgttaa
- Protein Sequence
- MARKCCVKNCEINGSDVHAVGIPIHRFPKDQQLKCKWLKNAGFSNNYKPLPGQFVCFRHFCKNDYEKVNKNTANSPGHKFLLKKGSVPTIFDNYENHPDPIIPFTKSSELNNSTEDSNPVNIEMTQMEKENSHETELSNSKPDAEKSKPASEESKKETSKNLPINTDNKSESIKKSPPSSDNLSTENTQNVVDTAVEKKEFTEDPPAKPPPLSNDSIVKSEISSNSNNKSNGSVEKNTAVKKTSGDNKNGKNTKSGKNKTANKLGLKFYPGAKLEAKDFNEKWYAARVVETDWAEREVLIHFDKWSSRYNEWIPMDSSRLRSFQMQPSEQVWVLPDQDTKMREFAVGERILATWADGRKYPAKVNAVLGDDKYDVLFDDGYAKIVRSSKMTKIASTSSKNSSKTMESESYIGSKQERRDKSRKHSVVDLFSHKKRTKADGVDKSLNKKDDSVVVNDNNEQLNNSDSVNDSADATGGELDDSSSEVLQGFENSKPKVRNGAKRKREVVNDYDDDTGPEWVDGEPQGVESFAVDGNEGSRRSIIIPDKKLPPGWQKHFIQRKTGSSAGKWDVVFFHEPTSKKFRSRNDLKVFFESQRPNNYDPDKFDFCIHRRKKTVSAKAKTDAGTSGSSNPPTTNEVPKKIKTLLPKSKTATTNDLLLTPVTNNYSTPNPAPVEDTAVFIGGLRVEMENSAYKCPKDGCAKTLRNENLLQMHIKHYHPEFSKYLGSTPNVADLAYARTIGEPIIDATPKKSINNYSDKPTSRFDKRKTNSDKFSSSLNHSLSQSFAASSPLSVASPDTSQIDSQLNGLKDDMKLELMSPGSSASLDIDDELTKKSDGSCAMSPGSLFDMKSKEEKTQAGIKTLLPLRPANSVDTTRMDRSKSLDDTFNSDRGQRKRQLSEYSSDASTKSKKRHGIQELTDDYGDLDDSALDTEGPTPLMYRFSRRKSDSKSDDNSQNGDGVMMMINGEMVKVEQLKREEIINCTCGIVEEDGLMIQCDLCLCWQHGHCNAIEREKDVPEKYICYICRHPYRQRPSKKYIHDQDWIKEGKLQSLSKRTKNQDTINKRAAMLKRSYDLVGALIQIQQILHSLRVKINVAQNKDHPKLYLWAKNWEKSELPKPNVEPIPIMEIIKSEPVSPDTDTDVCQSDMKSEPIDSDTKEEINCDRSIHSDSELMKILEEDNNPSADEPKIKKENSIKNNKEDNLLTPTATNGDDKIPQKSNKTDGPKVKSKDDTENLNSQSGEPSTDNQMPFAAVNGDDSLNVNDNEQVIQSSKGFESTLQDKPAMPQPFIPEPEAPIDPDECRLRLLDHVDHFQNHIEARLTGIEAQVSLLEAMDPDSDLPLDKVELRVKETMKMLLRDLNTVRKLASLC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01005160; iTF_01003572; iTF_01004309; iTF_01004248; iTF_01005084; iTF_01006137; iTF_01006065;
- 90% Identity
- iTF_01006137;
- 80% Identity
- iTF_01003572;