Mmyr021538.1
Basic Information
- Insect
- Microdon myrmicae
- Gene Symbol
- MBD2
- Assembly
- GCA_963931805.1
- Location
- OZ007500.1:96475372-96476738[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.7e-23 5.7e-19 68.4 0.1 1 64 7 67 7 85 0.92 2 2 3.2e-05 0.21 12.1 0.0 29 74 163 217 138 220 0.85
Sequence Information
- Coding Sequence
- ATGAATCCCAATATCACAATCGAAAGAAAACGTGTAGACTGTAATTCAGTTCCAAAAGGATGGCAACGGGAGGATGTACTTCGAAGATCAGGGATATCAGCTGGCAAAGTTGATGTGTATTATTACAGTCCCAGTGGTAAAAAATTTGATAGTAAACCCCAACTAGCACGTCAACTAGGCGATAATATAGAAATAACCGCATCTGAATTTCAATCGGGTAAGACCATACAAAATTTACCACCACCGTCGATATCATTGCATCGATGTAGCGGCTCGTCGTCAAACTCCCTCAAACGAAAGTATAAATCCCCGatcacaacaacaacaatatCAACGCCGTCGGCAACACCACCATCTATACCTTCTGGTGGATTCGCTGGAGCACTATCCTCTAGTTCCTCCCATAGCATCTCAACATCAAATAGTAGTGGTAGCTCCCCACTTCCATCATCGACTCTAAGACAGCATCTTGAGTTCAGCCGAATTTTACGGGCAGATGTTTCATTAGTGCCACCGATTCGTCAAACCGCATCTATCTTCAAACAGCCAGTAACAGTTGTACGAAATCACGAGAATAGTAAAGTAAAACATGACGTCAAACATAGCAGCCAGGAGAAACCAAAGCAACTATTCTGGGAGAAACGCTTGGAAGGACTACGAGCATGTAACGTATCGGGCGAGGAATTCGATAATATTGAACTACCTCGTGGAATACGATCAGTTGGGCCAAATGTCAATGAACAAACGGTTCTACAATCAGTGGCGACTGCTTTACATATCCAAAATCAACCGGTCACTGGTCAAACATCAGCGAAGTTAGAGCTCACAAAAAATTCCGGAGCGTTTTTAAATCCCGACCAACCATTGATGCAGTCGTTTGTTATATCTGAGGATGATATACGTCGCCAGGAAGATCGTGTCAATATAGCTAGGAAAAGATTGCAAGACGCTTTAAAGGTTTAG
- Protein Sequence
- MNPNITIERKRVDCNSVPKGWQREDVLRRSGISAGKVDVYYYSPSGKKFDSKPQLARQLGDNIEITASEFQSGKTIQNLPPPSISLHRCSGSSSNSLKRKYKSPITTTTISTPSATPPSIPSGGFAGALSSSSSHSISTSNSSGSSPLPSSTLRQHLEFSRILRADVSLVPPIRQTASIFKQPVTVVRNHENSKVKHDVKHSSQEKPKQLFWEKRLEGLRACNVSGEEFDNIELPRGIRSVGPNVNEQTVLQSVATALHIQNQPVTGQTSAKLELTKNSGAFLNPDQPLMQSFVISEDDIRRQEDRVNIARKRLQDALKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00694636;
- 90% Identity
- -
- 80% Identity
- -